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. 2018 Dec 21;63(1):e00995-18. doi: 10.1128/AAC.00995-18

TABLE 2.

List of primers used in this study

Purpose and name Sequence (3′–5′)
CgEPA3 gene cloning
 pGREG_CgEPA3_I_FW TGCTATTAGGTCAACCTTGTAACAGCTGCCATAGCTATTCGAACTATAGCTTAAG
 pGREG_CgEPA3_I_Rev CAGTTGCCACGATGACTAGTCAGCTGGAGCTCAGTACATTAATCAATACAGTGCG
 pGREG_CgEPA3_II_FW GTCATCGTGGCAACTGTGATTTTCTTTCTAGATTCCTACT
 pGREG_CgEPA3_II_Rev CGTGAAAAAAAGACTAAATTCAGCTGGAGCTCAGTACATTAATCAATACAGTGCG
pGREG576 GAL-to-PDCI promotor replacement
 pGREG_PDCI_ FW TTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCAGCATTTTTATACACGTTTTAC
 pGREG_PDCI_Rev GAAAAGTTCTTCTCCTTTACTCATACTAGTGCGGCTGTTAATGTTTTTTGGCAATTG
CgEPA1, CgEPA3, CgEPA9, CgEPA10, AWP12 and AWP13 gene disruption
 ΔCgEPA1_FW GCACTAGTCGCCGGACAAAATCAAACCAATTAACGTTTCTGATTTAGAGTTCTTACTTCTTTTTCGAAAC
 ΔCgEPA1_Rev GGTCGGAGTGCTACATTTTGGTCCTTTATATTATTGAAGGTATCAAATCGTAACATTTTCGACACCACCG
 ΔCgEPA3_FW GCACTAGTCGCCGGTAACTAAAAAAAAGAAAACATTGAAAAAGACTAGTTAAATTAAGCTAATACTACCA
 ΔCgEPA3_Rev GGTCGGAGTGCTACATTAAGACAAGGGAATTAAAGATAATACTATAACAAAGAGAAATAAGTAACTAATT
 ΔCgEPA3_SAT1_FW ATCATTCCTGGTTTGACAATGGAACTTTACTCTTACCCTATTGTCAGTGGTACTCCTCCCATGGACGGTGGTATGTTTTA
 ΔCgEPA3_SAT1_Rev GCTTCGAAGCTTTACCCTTGTACTCTGAAAAATTAGGGATATTAAAGACAGAACTAGAGGTTAGGCGTCATCCTGTGCTC
 ΔCgEPA9_FW TCACTAAGTGGATGAAATGCAGAAAGAATACAATTTAACCCTCTTCAATGCGATCCGGCGGCCGCTGATCACG
 ΔCgEPA9_Rev CAACTGCCAAAGGGTTCACAAGTTGAATACCAGGCCAACCATCATCAGTGGCAGGGCGACATCGTGAGGCTGG
 ΔCgEPA10_FW GCACTAGTCGCCGGGCTAATACCTGATCGTAGACTATATTACTTCATAAAACTTTTGTTACCTACCCGTA
 ΔCgEPA10_Rev GGGAAAGAAAAATCAACCACATTGGCAAAACGTAGACATCTTGTCAACTGCCAAAGCATCGTGAGGCTGG
 ΔCgAWP12_FW TACTTAAAATTTCCTTTCTCAATCAACAAAAATATCCATTAACTGAAAAAGAATACGGCGGCCGCTGATCACG
 ΔCgAWP12_Rev TATCAATGTTCATATTGAAAGAAACAGCCTATCTAAAAATCATGGCTGGACGAACGCGACATCGTGAGGCTGG
 ΔCgAWP13_FW ATTACGTGACAAAAGACAGATAAAGGAATTCTAAATATCCATCTACAAGACCATTCGGCGGCCGCTGATCACG
 ΔCgAWP13_Rev CCTATCTAAAAATCATGGCTGGACGAACGTTTGTATTACTGTACATGTTGGGCATTCGACATCGTGAGGCTGG
 ΔCgEPA1_conf_FW TAAATAAGTTTTTATCTCGACC
 ΔCgEPA1_conf_Rev GGTTTTCATTGACCGAAG
 ΔCgEPA3_conf_FW CGGAACTTCATTGGTATG
 ΔCgEPA3_conf_Rev CATACCAATGAAGTTCCG
 ΔCgEPA3_SAT1_conf_FW CCCAGAACCCATTTGGTTATCC
 ΔCgEPA3_SAT1_conf_Rev GCCCAGATAACAACACAAGTCC
 ΔCgEPA9_conf_FW CTTTTGGTATCTGACTCTGTTAT
 ΔCgEPA9_conf_Rev GGTCCCAAGAGATTTTACC
 ΔCgEPA10_conf_FW TGTCTCAGTCTATGGCTTTC
 ΔCgEPA10_conf_Rev CTCAAGTGTCTCCCAACA
 ΔCgAWP12_conf_FW GCCTGTGGATATTGCTACT
 ΔCgAWP12_conf_Rev GTCACTGATTGAAAGTTCTCG
 ΔCgAWP13_conf_FW GTATATTTTCAAGTGCTGCAT
 ΔCgAWP13_conf_Rev CTACCGTGGTTTCACTTG
RT-PCR experiments
 CgEPA1_FW TTGATTGCTGCAGAAGGGATT
 CgEPA1_Rev ATGGCGTAGGCTTGATAATTTCC
 CgEPA3_FW GTTCCTGTCACCAGCACCATATACTA
 CgEPA3_Rev CCTTGGCAACTAGGTGTTTGG
 CgCDR1_FW GCTTGCCCGCACATTGA
 CgCDR1_Rev CCTCAGGCAGAGTGTGTTCTTTC
 CgACT1_FW AGAGCCGTCTTCCCTTCCAT
 CgACT1_Rev TTGACCCATACCGACCATGA