Table 2.
Distribution of genotype and allele frequencies in Qinchuan cattle
| Site | Genotype (N) | Genotypic frequency (%) | Alleles | Allele frequency (%) | χ2 (HWE) | PIC |
|---|---|---|---|---|---|---|
| G10563T | GG (348) | 66.92 | G | 81.25 | p>0.05 | 0.2583 |
| rs722568839 | GT (149) | 28.65 | T | 18.75 | ||
| TT (23) | 4.43 | - | - | |||
| T10588C | TT (290) | 55.77 | T | 74.04 | p>0.05 | 0.3105 |
| rs132917098 | TC (190) | 36.54 | C | 25.96 | ||
| CC (40) | 7.69 | - | - | |||
| C10647T | CC (268) | 72.12 | C | 70.77 | p>0.05 | 0.3281 |
| rs45938133 | CT (200) | 24.23 | T | 29.23 | ||
| TT (52) | 3.65 | - | - |
χ2 (HWE), Hardy-Weinberg equilibrium χ2 value, Hard-Weinberg equilibrium (p>0.05), Hardy–Weinberg disequilibrium (p<0.05).