Table 2. Sequencing results, reads pre-processing and mapping summaries.
| Treatment | Samples | Raw PE reads | Trimmed PE reads | Mapped PE reads | Mapping rate (%) |
|---|---|---|---|---|---|
| Domesticated - High | DH.1MA | 23.0 M | 22.4 M | 18.0 M | 80.1 |
| Domesticated - High | DH.4MA | 23.3 M | 22.7 M | 18.2 M | 80.4 |
| Domesticated - High | DH.5MA | 33.9 M | 21.5 M | 17.6 M | 81.9 |
| Domesticated – Low | DL.4MA | 23.3 M | 22.6 M | 17.9 M | 79.3 |
| Domesticated – Low | DL.5MA | 23. 4M | 22.8 M | 17.9 M | 78.6 |
| Domesticated – Low | DL.6MA | 23.4 M | 22.8 M | 17.7 M | 77.9 |
| Wild –High | WH.1MA | 22.3 M | 21.6 M | 17.6 M | 82.0 |
| Wild –High | WH.2MA | 22.5 M | 21.9 M | 18.0 M | 81.9 |
| Wild –Low | WL.1MA | 22.9 M | 22.2 M | 15.9 M | 71.6 |
| Wild –Low | WL.3MA | 23.2 M | 22.6 M | 17.6 M | 77.8 |
| Wild –Low | WL.6MA | 22.3 M | 21.6 M | 16.4 M | 75.7 |