Table 2.

The top predictive variants and their associated genes

Chromosome	Positiona	SNP ID	REF	ALT	ALT frequency	ENSEMBL gene ID	Gene symbol
1	228929158	rs4140409	C	T	0.675496689	NA	NA
1	228940615	rs241304	A	G	0.619205298	NA	NA
1	230244458	rs910500	A	G	0.440397351	ENSG00000143641	GALNT2
1	230245900	rs11585739	T	C	0.470198675	ENSG00000143641	GALNT2
1	230294715	rs4846913	C	A	0.506622517	ENSG00000143641	GALNT2
2	61070652	rs1432297	G	A	0.516556291	ENSG00000228414	FLJ16341
2	61072183	rs35194171	T	A	0.539735099	ENSG00000228414	FLJ16341
2	61072567	rs35741374	C	T	0.543046358	ENSG00000228414	FLJ16341
2	61075111	rs1177205	A	T	0.456953642	ENSG00000228414	FLJ16341
2	61075189	rs1177206	C	T	0.460264901	ENSG00000228414	FLJ16341
2	61075209	rs1177207	G	A	0.456953642	ENSG00000228414	FLJ16341
2	61075765	rs750026	T	C	0.463576159	ENSG00000228414	FLJ16341
2	61075987	rs750027	C	G	0.456953642	ENSG00000228414	FLJ16341
2	61080482	rs842625	G	A	0.456953642	ENSG00000228414	FLJ16341
2	61085723	rs842631	C	T	0.460264901	ENSG00000228414	FLJ16341
2	240674948	rs11678404	C	T	0.271523179	NA	NA
4	68311813	rs373609666	T	TACCGCCACCGCC	0.205298013	ENSG00000250075	RP11–584P21.2
6	3424481	rs9405201	C	T	0.32781457	ENSG00000137266	SLC22A23
6	3433318	rs17309827	T	G	0.400662252	ENSG00000137266	SLC22A23
6	3433713	rs9392492	G	GA	0.301324503	ENSG00000137266	SLC22A23
6	37789321	rs10456096	G	A	0.347682119	ENSG00000156639	ZFAND3
8	22865320	rs2430815	T	G	0.781456954	ENSG00000008853	RHOBTB2
8	81278885	rs12543811	G	A	0.586092715	NA	NA
10	64379326	rs2393904	C	T	0.387417219	ENSG00000138311	ZNF365
11	7720426	rs4367936	C	A	0.42384106	ENSG00000183378	OVCH2
11	30438948	rs492604	C	T	0.463576159	ENSG00000066382	MPPED2
13	77589725	rs599115	A	C	0.582781457	ENSG00000005812	FBXL3
16	56368689	rs1065375	C	T	0.5	ENSG00000087258	GNAO1
19	20735272	rs7251976	T	C	0.440397351	ENSG00000237440	ZNF737
20	61342535	rs35927656	T	C	0.374172185	ENSG00000101188	NTSR1
22	26168558	rs3848858	A	G	0.298013245	ENSG00000133454	MYO18B

^aChromosome position refers to GRCh37