Table 1.

Candidate Genes Linked To IBD-Associated SNPs, Identified Via The Capture Hi-C Plotter (CHiCP) (https://www.chicp.org/). ^aConfirmed by 4C-seq in (97)

Chr	Position (Mb)	SNP	Interacting Gene Promoters	Cell Types With Significant Interactions
5	176.79	rs12654812	MXD3	monocytes, erythroblasts, endothelial precursors, naive B, naive CD4, neutrophils, total B, total CD4 activated and nonactivated, total CD4 MF, total CD8
			PRR7	monocytes, naive CD8, total CD8, total B, total CD4 nonactivated
			DDX41	monocytes, naive B, total B, naive CD8, total CD8, naive CD4, total CD4 nonactivated, total CD4 MF
			DOK3	monocytes, naive CD8, total CD8, total B
			DBN1	monocytes
			LMAN2	endothelial precursors, M0, M1, M2 macrophages, erythroblasts, megakaryocytes, naive B, total B, naive CD4, total CD4 activated and nonactivated, total CD4 MF, naive CD8, total CD8
			RGS14	endothelial precursors, M0, M1, M2 macrophages, erythroblasts, megakaryocytes, naive B, total B, naive CD4, total CD4 activated and nonactivated, total CD4 MF, naive CD8, total CD8
			SLC34A1	erythroblasts, M1 macrophages, megakaryocytes, total CD4 activated
6	138.00	rs6920220	TNFAIP3	monocytes, M1, M2 macrophages, naive CD8, total CD8, total CD4 activated
			IFNGR1 a	monocytes
9	117.55	rs4246905	AKNA	monocytes, endothelial precursors, M0, M1, M2 macrophages, naive B, neutrophils, total B, total CD4 activated, total CD4 MF, total CD8
			TNFSF8	endothelial precursors, naive CD4, total CD4 activated
14	75.70	rs4899554	FOS	monocytes, M1, M2 macrophages, naive B, neutrophils, total CD4 activated
			NEK9	monocytes, erythroblasts, M1 macrophages, neutrophils, naive CD4
			TMED10	M2 macrophages, naive B, total B, naive CD8, total CD8, total CD4 activated, total CD4 MF
20	48.95	rs913678	CEBPB	monocytes, M2 macrophages, neutrophils