Table 1.
Details of Japanese encephalitis virus strains detected from culicines, captured in Shanghai during May to November 2016
| Strain | Host | Collection date | Geographical location | Habitat | GenBank ID | ||
|---|---|---|---|---|---|---|---|
| NS5 | E | prM | |||||
| PD3G_16-9-S-Cut-R-10-3 | Culex tritaeniorhynchus | 23-Sep-16 | Songjiang District | Livestock farm | MG686629 | MG673540 | |
| PD3H_16-9-S-Cut-C-4-1 | Cx. tritaeniorhynchus | 2-Sep-16 | Songjiang District | Suburb residential area | MG686630 | ||
| PD8F_16-9E-P-Cut-C-2-21 | Cx. tritaeniorhynchus | 2-Sep-16 | Pudong New Area | Suburb residential area | MG686631 | ||
| QP5E_16-7L-Q-Cup-R-4-1 | Cx. pipiens (s.l.) | 24-Jul-16 | Qingpu District | Suburb residential area | MG686632 | MG673536 | MG673541 |
| HP4A_16-7-H-Cut-C-5-2 | Cx. tritaeniorhynchus | 22-Jul-16 | Huangpu District | Urban residential area | MG686635 | MG673537 | MG673543 |
Abbreviations: NS5 non-structural 5 gene, E envelope gene, prM pre-membrane gene