2.
circRNA ID | P | FC | Regulation | Chromosome | Strand | Gene symbol |
circRNA, circular RNA; UM, uveal melanoma; FC, fold change; circRNA ID was based on circBase (http://www.circbase.org/); TRPM3, transient receptor potential cation channel subfamily M member 3; SLC16A14, solute carrier family 16 member 14; NRXN1, neurexin 1; KCNH5, potassium voltage-gated channel subfamily H member 5; ABI3BP, ABI family member 3 binding protein; DLG2, discs large MAGUK scaffold protein 2; RASGRP3, RAS guanyl releasing protein 3; RTTN, rotatin; NT5DC3, 5’-nucleotidase domain containing 3; GALNT3, polypeptide N-acetylgalactosaminyltransferase 3. | ||||||
Top 10 down-regulated circRNAs | ||||||
hsa_circ_0138941 | 0.0003893 | 283.763 | Down | Chr9 | − | TRPM3 |
hsa_circ_0138937 | 0.0007409 | 269.396 | Down | Chr9 | − | TRPM3 |
hsa_circ_0138940 | 0.0007775 | 235.564 | Down | Chr9 | − | TRPM3 |
hsa_circ_0119311 | 0.0003781 | 234.496 | Down | Chr2 | − | SLC16A14 |
hsa_circ_0138938 | 0.0002563 | 195.268 | Down | Chr9 | − | TRPM3 |
hsa_circ_0054525 | 0.0003071 | 167.859 | Down | Chr2 | − | NRXN1 |
hsa_circ_0138943 | 0.0007409 | 164.587 | Down | Chr9 | − | TRPM3 |
hsa_circ_0102350 | 0.0005263 | 164.385 | Down | Chr14 | − | KCNH5 |
hsa-circRNA13657-1 | 0.0018337 | 161.768 | Down | Chr3 | − | ABI3BP |
hsa_circ_0096593 | 0.0022401 | 146.897 | Down | Chr11 | − | DLG2 |
Top 10 up-regulated circRNAs | ||||||
hsa_circ_0119872 | 0.0005712 | 45.064 | Up | Chr2 | + | RASGRP3 |
hsa_circ_0108830 | 0.0017993 | 26.919 | Up | Chr18 | − | RTTN |
hsa-circRNA4393-3 | 0.0004631 | 26.719 | Up | Chr2 | + | RASGRP3 |
hsa_circ_0097065 | 0.0005249 | 26.481 | Up | Chr12 | − | NT5DC3 |
hsa_circ_0053943 | 0.0007234 | 26.189 | Up | Chr2 | + | RASGRP3 |
hsa_circ_0056902 | 0.0027034 | 26.141 | Up | Chr2 | − | GALNT3 |
hsa-circRNA10088-5 | 0.0008077 | 25.652 | Up | Chr12 | − | NT5DC3 |
hsa_circ_0119871 | 0.0003551 | 25.067 | Up | Chr2 | + | RASGRP3 |
hsa-circRNA10088-11 | 0.0008296 | 24.219 | Up | Chr12 | − | NT5DC3 |
hsa-circRNA11838-9 | 0.0028436 | 24.061 | Up | Chr18 | − | RTTN |