Skip to main content
. 2018 Dec;30(6):656–668. doi: 10.21147/j.issn.1000-9604.2018.06.10

2.

Top 10 significantly down-regulated and up-regulated circRNAs in UM tissues ranked by FC

circRNA ID P FC Regulation Chromosome Strand Gene symbol
circRNA, circular RNA; UM, uveal melanoma; FC, fold change; circRNA ID was based on circBase (http://www.circbase.org/); TRPM3, transient receptor potential cation channel subfamily M member 3; SLC16A14, solute carrier family 16 member 14; NRXN1, neurexin 1; KCNH5, potassium voltage-gated channel subfamily H member 5; ABI3BP, ABI family member 3 binding protein; DLG2, discs large MAGUK scaffold protein 2; RASGRP3, RAS guanyl releasing protein 3; RTTN, rotatin; NT5DC3, 5’-nucleotidase domain containing 3; GALNT3, polypeptide N-acetylgalactosaminyltransferase 3.
Top 10 down-regulated circRNAs
 hsa_circ_0138941 0.0003893 283.763 Down Chr9 TRPM3
 hsa_circ_0138937 0.0007409 269.396 Down Chr9 TRPM3
 hsa_circ_0138940 0.0007775 235.564 Down Chr9 TRPM3
 hsa_circ_0119311 0.0003781 234.496 Down Chr2 SLC16A14
 hsa_circ_0138938 0.0002563 195.268 Down Chr9 TRPM3
 hsa_circ_0054525 0.0003071 167.859 Down Chr2 NRXN1
 hsa_circ_0138943 0.0007409 164.587 Down Chr9 TRPM3
 hsa_circ_0102350 0.0005263 164.385 Down Chr14 KCNH5
 hsa-circRNA13657-1 0.0018337 161.768 Down Chr3 ABI3BP
 hsa_circ_0096593 0.0022401 146.897 Down Chr11 DLG2
Top 10 up-regulated circRNAs
 hsa_circ_0119872 0.0005712 45.064 Up Chr2 + RASGRP3
 hsa_circ_0108830 0.0017993 26.919 Up Chr18 RTTN
 hsa-circRNA4393-3 0.0004631 26.719 Up Chr2 + RASGRP3
 hsa_circ_0097065 0.0005249 26.481 Up Chr12 NT5DC3
 hsa_circ_0053943 0.0007234 26.189 Up Chr2 + RASGRP3
 hsa_circ_0056902 0.0027034 26.141 Up Chr2 GALNT3
 hsa-circRNA10088-5 0.0008077 25.652 Up Chr12 NT5DC3
 hsa_circ_0119871 0.0003551 25.067 Up Chr2 + RASGRP3
 hsa-circRNA10088-11 0.0008296 24.219 Up Chr12 NT5DC3
 hsa-circRNA11838-9 0.0028436 24.061 Up Chr18 RTTN