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. 2019 Jan 10;9:24. doi: 10.1038/s41598-018-37208-z

Table 3.

The biological processes that underlie variation in the root microbiome.

Biological process enrichment FDR q < 10%
stomatal complex formation 77.4 0.0004
PSII associated light-harvesting complex II catabolic process 18.1 0.0035
leaf vascular tissue pattern formation 7.3 0.0244
radial pattern formation 14.7 0.0277
root morphogenesis 13.4 0.0277
Golgi transport complex 12.9 0.0277
DNA endoreduplication 7 0.0355
negative regulation of photomorphogenesis 10.3 0.0355
photoinhibition 10.3 0.0355
embryo sac development 3.7 0.0675
pectate lyase activity 5.3 0.0683
anther dehiscence 7.2 0.0737
cellular response to abscisic acid stimulus 6.4 0.0843
nitrogen compound metabolic process 6 0.0843
cotyledon development 4.4 0.0843
cyclin-dependent protein kinase activity 4.4 0.0843
aging 3.6 0.0843

The biological (gene ontology, GO) processes enriched in the 1% tail results from GWAS, after mapping the difference in species richness in the bacterial and fungal communities for each accession. Storey’s procedure20 was used to correct for multiple testing.