Table 2:
Assembly statistics for P. westermani and comparable trematode genomes of similar size
| P. westermani | F. hepatica | O. viverrini | C. sinensis | |
|---|---|---|---|---|
| Assembly size (Mb)a | 922.8 | 1,275.0 | 606.0 | 546.9 |
| Ungapped size (Mb)b | 877.7 | 1,183.5 | 558.0 | 547.1 |
| Contig N50 (kb) | 7.0 (>100 bp) | 9.7 | NA | 14.7 |
| Scaffold N50 (kb) | 135 (>1kb) | 204 | 1,324 | 30.2 |
| Scaffold L50 | 1943 | 1,799 | 135 | 408 |
| Scaffold count | 30,466 (>1 kb) | 45,354 (>1 kb) | 4,919 (>1kb) | 31,822 |
| GC content (%) | 43.3 | 44.1 | 43.8 | 44.1 |
| Repeat content (%) | 45.2 | 57.1 | 28.9 | 32.6 |
| Protein coding genes | 12,852 | 15,740c | 16,356 | 13,634 |
| Longest scaffold (kb) | 809 | 1,565 | 9,657 | 2050 |
| BUSCO—Complete | 65.3% | 65.8% | 71.4% | 70.8% |
| BUSCO—Duplicated | 1.4% | 0.8% | 1.1% | 1.5% |
| BUSCO—Missing | 25.8% | 25.4% | 23.0% | 23.1% |
a
Combined length of all scaffolds in Mb.
b
Combined length of all scaffolds without gaps (Ns) in Mb.
c
Non-overlapping RNA-sequencing-supported gene models [23].
BUSCO: Benchmarking Universal Single-Copy Orthologs.