Table 1.
Useful numbers for modelling bacterial growth and evolution. All data refers to the bacterium E. coli. If no reference is given, the values come from in-house experiments for the MG1655 strain of E. coli. We also refer the reader to bionumbers [36] - an excellent source of biology-related numbers.
Parameter | Value |
---|---|
size | typical width 1μm, typical length 2-5μm |
exponential growth rate | maximum: ~2h–1, sub-optimal conditions: 0.3–1.5 h–1 |
minimum doubling time | ~ 20 min |
elongation rate | 0.1 – 0.2μm/min (on rich medium) |
maximum density | ~ 1–5 ×109 cells per ml (LB medium, stationary phase) |
mutation rate | ~ 2 × 10–10 per bp per replication [30] |
glucose molecules consumed to make 1 cell | ~ 1.8 × 1010 [26,31] |
weight | 280 fg per cell [32] |
protein molecules per cell | 2.35 × 106 (1850 distinct protein molecules) [32] |
mRNA molecules per cell | 1380 [32] |
genome size | 4.5 × 106 bp |
genome copy number | 1 (slow growth) to 8 (fast growth) [33] |
abundance of RNA polymerase | ~ 1% of total protein mass [34] |
abundance of ribosomes (growth rate dependent) | ~20-40% of total mass [32]; ~ 7000-70,000 per cell |
DNA replication rate | 580 - 1,190 bp/s [34] |
mRNA elongation rate (transcription) | 39-56 nucleotides/s [34] |
peptide elongation rate (translation) | 13-22 amino acids/s [34] |
intracellular concentration of ATP (growth in glucose-fed chemostat) | 9.6mM [35] |
intracellular concentration of a typical metabolite | 0.1-100mM [35] |
total intracellular metabolite concentration | ~300mM [35] |
plasmid size | ~2-500kbp |
plasmid copy number | ~1-200 per cell |
minimal inhibitory concentration, | |
- ampicillin (inhibits cell wall synthesis) | ~ 8μg/ml (LB medium) |
- rifampicin (RNA synthesis inhibitor) | ~ 3μg/ml (LB medium) |
- ciprofloxacin (DNA gyrase inhibitor) | ~ 20ng/ml (LB medium) |