Table 2.
List of genes in the synurophycean plastid genome
| Classification | Genes | |||||||
|---|---|---|---|---|---|---|---|---|
| Genetic systems | ||||||||
| Maintenance | dnaBS,M | |||||||
| RNA polymerase | rpoA | rpoB | rpoC1 | rpoC2 | ||||
| Translation | tsf | tufA | syfBSu,M,N | |||||
| Protein quality control | clpC | clpN | dnaK | ftsH | groEL | |||
| Transport | ||||||||
| Transport | cemAS,M, N | secA2 | secY | sufB | sufC | tatC | ||
| ATP synthesis | ||||||||
| ATP synthase | atpA | atpB | atpD | atpE | atpF | atpG | atpH | atpI |
| Ribosomal proteins | ||||||||
| Large subunit | rpl1 | rpl2 | rpl3 | rpl4 | rpl5 | rpl6 | rpl11 | rpl12 |
| rpl13 | rpl14 | rpl16 | rpl18 | rpl19 | rpl20 | rpl212 | rpl22 | |
| rpl23 | rpl24 | rpl272 | rpl29 | rpl31 | rpl33 | rpl342 | rpl35 | |
| rpl36 | ||||||||
| Small subunit | rps2 | rps3 | rps4 | rps5 | rps7 | rps8 | rps9 | rps10 |
| rps11 | rps12 | rps13 | rps14 | rps16 | rps17 | rps18 | rps19 | |
| rps20 | ||||||||
| Metabolism | ||||||||
| Carbohydrates | rbcL | rbcS | ||||||
| Lipids | acpP | |||||||
| Nucleotides | ||||||||
| Amino acids | ilvB | ilvH | ||||||
| Cofactors | ascF | chlI2 | ||||||
| Photosystems | ||||||||
| Photosystems I | psaA | psaB | psaC2 | psaD2 | psaE | psaF | psaI | psaJ |
| psaL | psaM2 | ycf3 | ycf4 | |||||
| Photosystmens II | psbA2 | psbB | psbC2 | psbD2 | psbE | psbF | psbH | psbI |
| psbJ | psbK | psbL | psbN | psbT | psbV | psbW | psbX | |
| psbY2 | ycf12 | |||||||
| Cytochrome complex | cbbX | ccs12 | ccsA2 | petA | petB | petD | petF | petG |
| petJ2 | petL | petM2 | petN2 | |||||
| Redox system | ftrB | |||||||
| Unknown | ||||||||
| Conserved ORFs | orf2152 | ycf19 | ycf362 | ycf54 | ycf66 | |||
Note. 2present as repeated genes, Mpresent in Mallomonas splendens, Npresent in Neotessella volovocina, Spresent in three species of genus Synura, Supresent only in Synura uvella in plastid genome