Table 4.
Genotyping of ESBL producing E. coli originated from the Ouche river.
| Strain numbera | Sampling siteb | Habitat | Sequence Type (clonal complex when existing) | blaCTX–M gene (CTX-M group) | Occurence of intl1 sequencec |
|---|---|---|---|---|---|
| MIAE02070 | 6# Mâlain | Biofilm | 10 (10) | 15 (1) | − |
| MIAE02071 | 8# Dijon | Biofilm | 212 | 1 (1) | + |
| MIAE02072 | 9# Dijon | Biofilm | 38 (38) | 27 (9) | − |
| MIAE02073 | 9# Dijon | Biofilm | 367 (23) | 1 (1) | + |
| MIAE02074 | 9# Dijon | Biofilm | 540 | 1 (1) | + |
| MIAE02075 | 9# Dijon | Biofilm | 1850 | 1 (1) | + |
| MIAE02076 | 9# Dijon | Biofilm | 367 (23) | 1 (1) | + |
| MIAE02077 | 9# Dijon | Biofilm | 410 (23) | 15 (1) | − |
| MIAE02078 | 9# Dijon | Biofilm | 2851 | 15 (1) | + |
| MIAE02079 | 9# Dijon | Biofilm | 1167 | 1 (1) | − |
| MIAE02080 | 9# Dijon | Biofilm | 410 (23) | 15 (1) | − |
| MIAE02081 | 9# Dijon | Biofilm | 10 (10) | 1 (1) | + |
| MIAE02082 | 10# Varanges | Biofilm | 181 (168) | 14 (9) | − |
| MIAE02083 | 10# Varanges | Biofilm | 23 (23) | 14 (9) | + |
| MIAE02084 | 3# Bligny-sur-Ouche | Water | 10 (10) | 1 (1) | + |
| MIAE02085 | 4# Pont d’Ouche | Water | 410 (23) | 1 (1) | − |
| MIAE02086 | 6# Mâlain | Water | 1431 | 15 (1) | + |
| MIAE02087 | 8# Dijon | Water | 10 (10) | 15 (1) | + |
| MIAE02088 | 9# Dijon | Water | 1196 | 1 (1) | − |
| MIAE02089 | 11# Tart l’Abbaye | Water | 69 (69) | 15 (1) | + |
| MIAE02090 | 11# Tart l’Abbaye | Water | 457 | 14 (9) | − |
| MIAE02091 | 13# Saint-Jean-de-Losne | Water | 744 | 1 (1) | − |
| MIAE02092 | 14# Saint-Jean-de-Losne | Water | 90 (23) | 15 (1) | + |
| MIAE02093 | 14# Saint-Jean-de-Losne | Water | 90 (23) | 15 (1) | + |
| MIAE02094 | 8# Dijon | Fish – roach | 38 (38) | 15 (1) | − |
| MIAE02095 | 8# Dijon | Fish – chub | 131 (131) | 1 (1) | − |
| MIAE02096 | 8# Dijon | Fish – chub | 617 (10) | 15 (1) | + |
| MIAE02097 | 8# Dijon | Fish – chub | 617 (10) | 15 (1) | + |
| MIAE02098 | 9# Dijon | Fish – vairone | 38 (38) | 27 (9) | − |
| MIAE02099 | 9# Dijon | Fish – vairone | 410 (23) | 14 (9) | − |
| MIAE02100 | 9# Dijon | Fish – vairone | 362 | 14 (9) | − |
| MIAE02101 | 9# Dijon | Fish – vairone | 362 | 14 (9) | − |
| MIAE02102 | 9# Dijon | Fish – vairone | 540 | 1 (1) | + |
| MIAE02103 | 9# Dijon | Fish – minnow | 354 (354) | 14 (9) | + |
| MIAE02104 | 9# Dijon | Fish –minnow | 357 | 15 (1) | − |
| MIAE02105 | 9# Dijon | Fish – chub | 10 (10) | 15 (1) | + |
aStrain numbers are from the MIAE collection hosted at INRA Dijon, UMR Agroecologie. bSite 13# is water from the Saône river at Saint-Jean-de-Losne and site #14 is water from the Saint-Jean-de-Losne harbor. c+ Presence, − absence.