Table 2.

Number of BCP-ALL subtype-specific lncRNAs co-expressed with its cis and trans PC genes

Subtype	Cis PC genes (n = 929)	lncRNAs co-expressed with cis PC genes (n = 621)	Trans PC genes (n = 753)	lncRNAs co-expressed with trans PC genes (n = 552)
DUX4	669	451 (736)	492	379 (736)
Ph-like	260	170 (383)	261	173 (383)

The table represents the number of significantly (Pearson correlation coefficient ≥ 0.55, two-tailed P value ≤ 0.05) co-expressed subtype-specific lncRNAs with their cis and trans protein-coding genes. The numbers shown within the bracket are the total number of subtype-specific lncRNAs. Cis PC genes, the protein-coding genes located within the cis (≤ 100 kb proximity) region of the subtype-specific lncRNAs; Trans PC genes, the protein-coding genes located within the trans region (≥ 100 kb) of subtype-specific lncRNAs