Table 3.
Subtype-specific lncRNAs and oncogenes
| Subtype-specific lncRNAs | Pearson correlation coefficient | P value | Oncogene |
|---|---|---|---|
| RP11-347C18.3 | 0.56 | 3.25E−008 | CDK6 |
| RP11-461F16.3 | 0.62 | 5.21E−010 | |
| RP11-96H19.1 | 0.62 | 3.89E−010 | |
| RP11-228B15.4 | 0.64 | 7.68E−011 | |
| MME-AS1 | 0.56 | 3.68E−008 | |
| CTB-39G8.3 | 0.57 | 1.78E−008 | |
| AC002454.1 | 0.72 | 2.21E−014 | |
| RP11-582 J16.4 | 0.55 | 8.08E−008 | |
| AC009970.1 | 0.64 | 6.23E−011 | |
| RP11-229P13.20 | 0.66 | 1.44E−011 | |
| LINC00114 | 0.57 | 3.06E−008 | |
| CTB-118N6.3 | 0.61 | 9.70E−010 | |
| SOCS2-AS1 | 0.62 | 4.94E−010 | |
| CTD-2561B21.10 | 0.61 | 9.91E−010 | |
| RP11-413E1.4 | 0.56 | 4.36E−008 | |
| KB-1460A1.1 | 0.55 | 7.77E−008 | |
| AC012309.5 | 0.59 | 4.10E−009 | |
| RP11-37B2.1 | 0.59 | 4.76E−009 | |
| ASB16-AS1 | 0.65 | 3.86E−011 | |
| LINC00426 | 0.62 | 6.32E−010 | |
| LINC01071 | 0.57 | 2.46E−008 | |
| RP11-536K7.5 | 0.74 | 5.11E−15 | IL2RA |
| RP11-224O19.2 | 0.98 | 1.08E−061 | TGFB2 |
| AC004837.5 | 0.83 | 6.11E−023 | |
| RP11-251M1.1 | 0.79 | 7.39E−019 | |
| CTD-2571L23.8 | 0.75 | 2.94E−016 | |
| RP11-35O15.1 | 0.65 | 3.36E−011 | |
| AC139100.3 | 0.58 | 1.00E−008 | |
| RP11-158M2.3 | 0.58 | 1.50E−008 | |
| RP11-672A2.5 | 0.56 | 4.68E−008 | |
| CTD-2357A8.3 | 0.55 | 7.46E−008 | |
| RP11-677M14.3 | 0.55 | 6.68E−008 |
Positively correlating novel cis subtype-specific lncRNAs with oncogenes, CDK6, TGFB2, and IL2RA from Ph-like and DUX4 subtypes