Table 5. Summary of A-domain rates for Dpg and 4-Hpg and product yields gained from the C-domain activity assay.
Time [min] | Yield
a
[%] |
|||
k cat [min–1] | Dpg-extended peptide products b | PCP6-bound peptide c | Hydrolysed starting peptide d | |
Dpg | 0.8 ± 0.02 | 68 ± 0.6 | 20 ± 0.3 | 12 ± 0.2 |
4-Hpg | 0.3 ± 0.004 | 33 ± 2.7 | 9 ± 1.2 | 58 ± 3.3 |
No AA | — | 0 | 28 e ± 0.1 | 72 e ± 1.7 |
No AA/Tcp12_ΔTE2 | — | — | 92 ± 0.5 | 8 ± 0.5 |
aTotal yield of extended peptide is based on the percentage reduction of initial hexapeptide peak from initial starting material.
bSum of elongated products either cleaved through the use of methylamine to cleave the PCP-bound thioester hydrolysed from the PCP7 domain of the Tcp12 construct during the course of the reaction.
cPCP6-bound peptide substrate cleaved with methylamine.
dStarting peptide hydrolysed from PCP6 during the course of the reaction.
eReaction included co-incubation with OxyBbal enzyme, so these values also include a very small proportion of monocyclic peptide starting material (<5%).