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. 2019 Jan 9;9:3305. doi: 10.3389/fmicb.2018.03305

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Copyright © 2019 Shates, Sun, Malmstrom, Dominguez and Mauck.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Viral links among hosts. We constructed a matrix of the 9 population groups sampled × 10 viral groups detected, where values for each population within the matrix represented the proportion of individuals sampled in which Illumina sequencing detected the corresponding virus group. We visualized the network structure with the network analysis software ORA-Lite version 11 (Carley et al., 2018), where the network was sized by betweenness centrality. The width of the edge between a given population and virus group represents the proportion of individuals with Illumina-detected infection. Sample codes indicate species (CF, CP, or DW), site of collection (M, Motte Rimrock; S, Shipley-Skinner), and population number within a site (1, 2, and 3).