Table 1.
A. hydrophila genomes used in comparative genomic analyses.
| No. | Species | Strain | Location | Source | Level | Accession | References |
|---|---|---|---|---|---|---|---|
| 1 | A. hydrophila | Arkansas 2010 | USA | Catfish | Contig | NZ_LYZH00000000.1 | Tekedar et al., 2017 |
| 2 | A. hydrophila | ML09-119 | USA | Catfish | Complete | NC_021290.1 | Tekedar et al., 2013 |
| 3 | A. hydrophila | ML09-122 | USA | Catfish | Contig | NZ_LRRY00000000.1 | Tekedar et al., 2016b |
| 4 | A. hydrophila | ML09-121 | USA | Catfish | Contig | NZ_LRRX00000000.1 | Tekedar et al., 2016b |
| 5 | A. hydrophila | AL10-121 | USA | Catfish | Contig | NZ_LRRW00000000.1 | Tekedar et al., 2016b |
| 6 | A. hydrophila | AL09-71 | USA | Catfish | Complete | NZ_CP007566.1 | Pridgeon et al., 2014b |
| 7 | A. hydrophila | pc104A | USA | Soil | Complete | NZ_CP007576.1 | Pridgeon et al., 2014a |
| 8 | A. hydrophila | S14-296 | USA | Catfish | Contig | SAMN05292365 | Rasmussen-Ivey et al., 2016 |
| 9 | A. hydrophila | S14-606 | USA | Catfish | Contig | SAMN05292366 | Rasmussen-Ivey et al., 2016 |
| 10 | A. hydrophila | S13-612 | USA | Catfish | Contig | SAMN05292362 | Rasmussen-Ivey et al., 2016 |
| 11 | A. hydrophila | S13-700 | USA | Catfish | Contig | SAMN05292363 | Rasmussen-Ivey et al., 2016 |
| 12 | A. hydrophila | Ahy_Idx7_1 | USA | Catfish | Contig | SAMN05292361 | Rasmussen-Ivey et al., 2016 |
| 13 | A. hydrophila | ALG15-098 | USA | Catfish | Contig | SAMN05223361 | Rasmussen-Ivey et al., 2016 |
| 14 | A. hydrophila | IPRS-15-28 | USA | Catfish | Contig | SAMN05223362 | Rasmussen-Ivey et al., 2016 |
| 15 | A. hydrophila | ML10-51K | USA | Catfish | Contig | SAMN05223363 | Rasmussen-Ivey et al., 2016 |
| 16 | A. hydrophila | S14-458 | USA | Catfish | Contig | SAMN05223364 | Rasmussen-Ivey et al., 2016 |
| 17 | A. hydrophila | S15-130 | USA | Catfish | Contig | SAMN05223365 | Rasmussen-Ivey et al., 2016 |
| 18 | A. hydrophila | S15-400 | USA | Catfish | Contig | SAMN05223367 | Rasmussen-Ivey et al., 2016 |
| 19 | A. hydrophila | ZC1 | USA | Grass carp | Contig | SAMN02404465 | Hossain et al., 2014 |
| 20 | A. hydrophila | AL09-79 | USA | Catfish | Contig | NZ_LRRV00000000.1 | Tekedar et al., 2016b |
| 21 | A. hydrophila | 2JBN101 | China | Crucian carp | Contig | NZ_LXME00000000.1 | Zhang et al., 2013 |
| 22 | A. hydrophila | D4 | China | Wuchang bream | Complete | NZ_CP013965.1 | Tran et al., 2015 |
| 23 | A. hydrophila | JBN2301 | China | Carp | Complete | NZ_CP013178.1 | Yang et al., 2016 |
| 24 | A. hydrophila | S15-591 | USA | Catfish | Contig | SAMN05223368 | Rasmussen-Ivey et al., 2016 |
| 25 | A. hydrophila | J-1 | China | Carp | Complete | NZ_CP006883.1 | Pang et al., 2015 |
| 26 | A. hydrophila | NJ-35 | China | Carp | Complete | NZ_CP006870.1 | Pang et al., 2015 |
| 27 | A. hydrophila | GYK1 | China | Chinese perch | Complete | NZ_CP016392.1 | Pan et al., 2004 |
| 28 | A. hydrophila | SNUFPC-A8 | S. Korea | Salmon | Contig | NZ_AMQA00000000.1 | Han et al., 2013 |
| 29 | A. hydrophila | NF1 | USA | Human clinical | Contig | NZ_JDWB00000000.1 | Grim et al., 2014 |
| 30 | A. hydrophila | Ae34 | Sri Lanka | Carp | Contig | NZ_BAXY00000000.1 | Jagoda et al., 2014 |
| 31 | A. hydrophila | M052 | Malaysia | Waterfall | Contig | NZ_MAKI00000000.1 | N/A |
| 32 | A. hydrophila | M053 | Malaysia | Waterfall | Contig | NZ_MAKJ00000000.1 | N/A |
| 33 | A. hydrophila | M062 | Malaysia | Waterfall | Contig | NZ_JSXE00000000.1 | Chan et al., 2015 |
| 34 | A. hydrophila | AHNIH1 | USA | Human clinical | Complete | NZ_CP016380.1 | Hughes et al., 2016 |
| 35 | A. hydrophila | AL06-06 | USA | Goldfish | Complete | NZ_CP010947.1 | Tekedar et al., 2015 |
| 36 | A. hydrophila | ATCC 7966 | USA | Milk tin | Complete | NC_008570.1 | Seshadri et al., 2006 |
| 37 | A. hydrophila | AL97-91 | USA | Tilapia | Contig | NZ_CM004591.1 | Tekedar et al., 2017 |
| 38 | A. hydrophila | MN98-04 | USA | Tilapia | Contig | NZ_CM004592.1 | Tekedar et al., 2017 |
| 39 | A. hydrophila | AH-1 | Canada | Moribund fish | Contig | NZ_LYXN00000000.1 | Forn-Cuní et al., 2016 |
| 40 | A. hydrophila | RB-AH | Malaysia | Soil | Contig | NZ_JPEH00000000.1 | Emond-Rheault et al., 2015 |
| 41 | A. hydrophila | NF2 | USA | Human clinical | Contig | NZ_JDWC00000000.1 | Grim et al., 2014 |
| 42 | A. hydrophila | S14-230 | USA | Catfish | Contig | SAMN05292364 | Rasmussen-Ivey et al., 2016 |
| 43 | A. hydrophila | 48_AHYD | USA | Human clinical | Scaffold | NZ_JVFM00000000.1 | Roach et al., 2015 |
| 44 | A. hydrophila | 53_AHYD | USA | Human clinical | Scaffold | NZ_JVDL00000000.1 | Roach et al., 2015 |
| 45 | A. hydrophila | 56_AHYD | USA | Human clinical | Scaffold | NZ_JVCD00000000.1 | Roach et al., 2015 |
| 46 | A. hydrophila | 52_AHYD | USA | Human clinical | Scaffold | NZ_JVDW00000000.1 | Roach et al., 2015 |
| 47 | A. hydrophila | 50_AHYD | USA | Human clinical | Scaffold | NZ_JVES00000000.1 | Roach et al., 2015 |
| 48 | A. hydrophila | AH10 | China | Grass carp | Complete | NZ_CP011100.1 | Xu et al., 2013 |
| 49 | A. hydrophila | TN-97-08 | USA | Bluegill | Contig | NZ_LNUR00000000.1 | Tekedar et al., 2016a |
| 50 | A. hydrophila | FDAARGOS_78 | USA | Human stool | Contig | JTBD01000000 | N/A |
| 51 | A. hydrophila | 226 | Malaysia | Human urine | Contig | NZ_JEML00000000.1 | Chan et al., 2011 |
| 52 | A. hydrophila | M013 | Malaysia | Waterfall | Contig | NZ_JRWS00000000.1 | Tan et al., 2015a |
| 53 | A. hydrophila | AD9 | USA | Wetland sediment | Contig | NZ_JFJO00000000.1 | Lenneman and Barney, 2014 |
| 54 | A. hydrophila | M023 | Malaysia | Waterfall | Contig | NZ_JSWA00000000.1 | Tan et al., 2015b |
| 55 | A. hydrophila | Ranae CIP 107985 | USA | Fish/Ranae | Scaffold | NZ_CDDC00000000.1 | Colston et al., 2014 |
N/A, Not available.