DP71 and SERCA2 alteration in human neurons of a Duchenne muscular dystrophy patient

Abstract

Cognitive deficit has been identified in one third of patients affected by Duchenne Muscular Dystrophy, primarily attributed to loss of the short Dp71 dystrophin, the major brain dystrophin isoform. In this study, we investigated for the first time the Dp71 and Dp71-associated proteins cellular localization and expression in human neurons obtained by differentiation from induced pluripotent stem cell line of a patient affected by cognitive impairment. We found structural and molecular alterations in both pluripotent stem cell and derived neurons, reduced Dp71 expression, and a Ca²⁺ cytoplasmic overload in neurons coupled with increased expression of the SERCA2 pump in the dystrophic neurons. These results suggest that the reduction of Dp71 protein in the Duchenne muscular dystrophy neurons leads to alterations in SERCA2 and to elevated cytosolic Ca²⁺ concentration with consequent potential disruption of the dystrophin proteins and Dp71-associated proteins.

Electronic supplementary material

The online version of this article (10.1186/s13287-018-1125-5) contains supplementary material, which is available to authorized users.

Background

Mutations in the dmd gene are responsible for the Duchenne muscular dystrophy (DMD) disease [1], in which muscular degeneration is also associated with cognitive defects likely due to loss of the smallest product of the dmd gene, the Dp71 dystrophin isoform [2]. Dp71 is the most abundant dystrophin gene product in the adult brain [3, 4], and DMD patients with Dp71 partial ablation display severe mental retard with a reduction of the mean intelligence quotient (IQ) by about 1 standard deviation [5]. In the CNS, Dp71 is detected in neurons [6], but little is known about its function for no availability of DMD patient’s brain tissues. Differentiation of hiPSCs into neural cells provides a recent technology to generate living neurons genetically identical to the patients’ ones. In this study, we have used the hiPSCs obtained from a DMD patient affected by serious cognitive impairment, to generate the correspondent neuronal lineage with the aim to establish a cell model to disclose the role of the Dp71 in the neuronal alterations associated with DMD. We have performed ultrastructural characterization and expression analysis for Dp71 and DAPs including AQP4 and βDG in both DMD hiPSCs and neurons. Moreover, to better understand the mechanism leading to alterations of neuronal cells in DMD brain, we have investigated the relationship between Dp71 and SERCA2 in DMD neurons. We evaluated the permeability of the endoplasmic reticulum (ER) blocking the SERCA2 pump by the specific inhibitor CPA. The results showed structural and molecular alterations in hiPSCs and neurons cells, a reduction of Dp71, and DAPs transcription and transduction. Interestingly, intracellular Ca²⁺ homeostasis was impaired in dystrophic neurons suggesting that, as in the dystrophic muscle [7, 8], an abnormal increase of intracellular Ca²⁺ could be involved as early pathogenic event of mental retard in DMD.

Materials and methods

Detailed methods are included in Additional file 1.

Case report

A 22-year-old patient shows a severe motor impairment; his total intelligence quotient (IQ), assessed with Wechsler Intelligence Scale for Children–Fourth Edition (WISC-IV), is 68, confirming the mild intellectual disability previously diagnosed (Additional file 1).

Generation of DMD hiPSCs

We have collected samples of PBMCs from a DMD patient and healthy donor. The PBMCs were reprogrammed to obtain the hiPSCs line as described in Additional file 1.

Neuronal differentiation

hiPSCs were maintained in supplemented mTeSR medium (Stem Cell Technologies) under standard conditions. hiPSCs were differentiated to glutamatergic sensory neurons using a previously described protocol [9, 10] (Additional file 1).

Electron microscopy

The hiPSCs and neurons cells were fixed and embedded in Epon 812. Semithin and ultrathin sections were performed as described in Additional file 1.

Dual immunofluorescence confocal laser scanning microscopy and morphometric analysis

hiPSCs and neuronal cells were fixed and then exposed to primary and corresponding secondary antibodies (Additional file 1: Table S1). The cells were examined under a Leica TCS SP2 (Leica, Wetzlar, Germany) confocal laser scanning microscope (Additional file 1).

Real-time PCR

The expression of mRNA for Dp71, AQP4, Dys, DG, and SERCA2 was evaluated by real-time PCR (Chromo4 Real-Time PCR Detection System - Bio-Rad Laboratories), and samples were normalized to cyclophylin-A as housekeeping gene (Additional file 1).

Western blotting

The protein content of Dp71, AQP4, Dys, DG, and SERCA2 was evaluated by immunoblotting analysis (Additional file 1).

Electrophysiological measurements

Both control and patient’s iPSC-derived glutamatergic neurons, plated on 35-mm culture dishes, were recorded at room temperature. Whole cell experiments were performed with a Multiclamp 700B amplifier (Axon CNS-Molecular Devices, Sunnyvale, CA, USA) connected to an Axon Digidata 1500 (Axon Instrument-Molecular Devices, Sunnyvale, CA, USA). Currents were sampled at 10 kHz and low pass filtered at 5 kHz (Additional file 1).

Intracellular Ca²⁺ measurements

Cells were seeded on matrigel-coated glass coverslips (Ø 35 mm). Cells were loaded with 2–4 μM Fluo-4 (Thermo Fisher Scientific, Waltham, MA, USA) 25 min at 37 °C in DMEM. Coverslips with dye-loaded cells were mounted in a perfusion chamber (FCS2 Closed Chamber System, BIOPTECHS, Butler, USA), and measurements were performed using an inverted microscope (Nikon Eclipse TE2000-S microscope) equipped for single-cell fluorescence measurements and imaging analysis (Additional file 1).

Statistics

Data are reported as means ± SEM. Student’s t test was used for two-group comparisons, and Bonferroni post-test was used to compare all treatment groups following one-way ANOVA. The Graph Pad Prim 5.0 statistical package (GraphPad Software, San Diego, CA, USA) was used for the analysis, and P < 0.05 values were considered statistically significant.

Results

Ultrastructural and morphological alterations of DMD-hiPSCs

On the semithin section of both control and patient, the neurospheres appeared rounded shape (Fig. 1a), while on the ultrathin sections, the hiPSCs showed ultrastructural differences. Control hiPSCs (Fig. 1b) appeared larger (50% more) with abundant mitochondria and organelles compared to the DMD-hiPSCs that showed heterochromatic and irregular nucleus (Fig. 1c). Morphometric analysis (Additional file 1: Figure S2) displayed a significant reduction of the DMD-hiPSCs surface area (29.35 ± 4.851SEM) and perimeter (15.69 ± 0.7255 SEM) compared to the control ones (107.9 ± 9.619 SEM; 31.85 ± 2.776 SEM).

Fig. 1.

a–c Semithin CTRL section stained with toluidine blue (a) showing a rounded neurosphere with healthy cells, and ultrathin section (b, c) of hiPSCs showing a larger CTRL hiPSCs with abundant mitochondria and organelles (b) compared to DMD hiPSCs with heterocromatic and irregular nucleus (c). d–i Dp71 green and AQP4 red confocal immunofluorescence show an intensity fluorescence reduction in DMD hiPSCs (g–i) compared to the control ones (d–f). Dp71 green signal is membrane disarranged and scattered in the cytoplasm in DMD hiPSCs (h arrow). An orange fluorescence colocalization of Dp71 and AQP4 is present in control cells (d yellow arrow) while separate fluorescent signals are present in DMD cells (g green and red arrows). l–q Dys red and βDG green confocal immunofluorescence display a Dys pointed cytoplasm signals (o, p red arrow) and disarranged βDG green fluorescent in DMD hiPSCs (o, q green arrow) compared to strong and polarized signals in the controls (l–n red arrow, green arrow). A merge orange signal for Dys and βDG is present in short membrane tracts in CTRL hiPSCs (l orange arrowhead) while separate signals are present in DMD hiPSCs (o green and red arrows). Morphometric analysis (r) shows a significant Dp71, AQP4, Dys, and βDG fluorescence intensity reduction in DMD compared to CTRL cells. The mRNA expression analysis (s) shows reduction of Dp71, AQP4, Dys mRNA, and increased of DG mRNA in the DMD cells compared with control. Scale bar: a 30 μm; b, c 2.5 μm; d–q 7.5 μm. Data are represented as mean ± SEM

The dual confocal immunofluorescence reaction on DMD-hiPSCs for Dp71 and AQP4, Dp427 dystrophin (Dys) and βDG (Fig. 1d–q) showed the reduction of the proteins (Fig. 1g–i, o–q) while a strong fluorescence signal was present in the control (Fig. 1d–f, l–n). The distribution pattern of the Dp71 and AQP4 proteins changed in the patient’s hiPSCs (Fig. 1g–i) compared to the control (Fig. 1d–f).

The Dp71 protein was membrane disarranged and scattered in the cytoplasm (Fig. 1h), and separate Dp71 and AQP4 fluorescence signal was detected in DMD (Fig. 1g). Otherwise, Dp71 and AQP4 strongly colocalized on the membrane and cytoplasm of control (Fig. 1d). Furthermore, DMD-hiPSCs displayed a strong molecular rearrangement of Dys and βDG proteins with a dystrophin pointed fluorescence signals in cytoplasm (Fig. 1o, p) and reduced βDG green fluorescence, while a strong and polarized fluorescence in control ones was observed (Fig. 1l–n). Moreover, Dys and βDG colocalized in a short membrane tract only in the control hiPSCs (Fig. 1l). Morphometric analysis shows a meaningful reduction of Dp71, AQP4, Dys, and βDG fluorescence intensity in DMD-hiPSCs compared to controls (Fig. 1r). Real-time PCR experiments revealed a significant reduction in mRNA amount of Dp71, AQP4, Dys, and an increment of the messenger for DG in DMD-hiPSCs compared to control (Additional file 1: Figure S1). In parallel, immunoblotting experiments show a significant reduction of the Dp71, AQP4, Dys, and βDG protein content (Additional file 1: Figure S4).

Ultrastructural and morphological alterations of DMD neurons

Control and patient’s hiPSCs were differentiated in mature glutamatergic sensory neurons [9]. Of note, both control and DMD-differentiated neurons were able to generate action potentials (Additional file 1: Figure S3). To identify the neurons, a TuJ-1 immunofluorescence reaction was performed (Fig. 2a). Noteworthy, control neurons were multipolar (Fig. 2b), whereas DMD neurons were prevalently unipolar and bipolar (Fig. 2c). To further characterize the neurons, a dual immunofluorescence reaction with antibodies anti-vesicular glutamate transporter-1 (VGLUT-1) and anti-neurofilament (NFH) was performed (Fig. 2d–m). The neurons, in both DMD and control patient, displayed an orange fluoresce signal of VGLUT-1 and NFH colocalization (Fig. 2d–f, h–l). Morphometric analysis showed no significant differences (P > 0.05) of VGLUT-1 and NFH fluorescence intensity between DMD (mean 4.04 ± SEM 0.17; mean 4.96 ± SEM 0.57) and control (mean 3.35 ± SEM 0.30; mean 6.40 ± SEM 0.47) neurons (data not shown). DMD neurons appeared structurally abnormal showing neuronal processes strongly spread out (Fig. 2h, m, arrow) compared with control ones (Fig. 2d–g). Ultrastructural analysis confirmed the alterations of DMD-neurons showing dilated processes containing autophagic vacuoles (Fig. 2n) compare to control neurons (Fig. 2o). Moreover, the confocal analysis for Dp71 and AQP4 showed the reduction of Dp71 protein in DMD neurons (Fig. 3d, e) compared to strong Dp71 expression in the control ones (Fig. 3a, b) while the AQP4 protein was lacking in DMD neurons (Fig. 3d, f) and weakly expressed in control one (Fig. 3a, c). Furthermore, Dys and βDG dual reaction showed a lower expression of the βDG on patient’s neurons (Fig. 3l, n) compared to the control ones (Fig. 3g, i) and a strong reduction in Dys expression with a clustered signal in DMD cytoplasm (Fig. 3l, m), while a diffuse signal in control cytoplasm (Fig. 3g, h) was detected. No Dys and βDG colocalization was observed in both control and DMD neurons (Fig. 3g, l). The confocal observations were confirmed by morphometric analysis (Fig. 3o). After qPCR, a significant reduction in the expression of mRNA coding for Dp71 and AQP4 and an increase of the messenger for DG and Dys were observed in DMD neurons when compared to control (Fig. 3p).

Fig. 2.

Confocal immunofluorescence reaction of TuJ-1 in CTRL (a, b) and DMD (c) neurons reveals prevalently multipolar control neurons (b inset) and unipolar and bipolar DMD neurons (c). VGLUT-1(green) and NFH (red) dual immunofluorescence shows DMD abnormal neurons with spread out processes (h–m, arrows) compared with the control ones (d–g). Neurons of both CTRL and DMD (d, h) display an orange fluorescence signal of VGLUT and NFH colocalization. Ultrastructural analysis shows DMD neurons with dilated processes containing autophagic vacuoles (n arrow), differently to healthy control neurons (o). Scale bar: a 40 μm; b 60 μm; c 20 μm; d, g, h, m, 10 μm; e, f, i, l 20 μm; n, o 0.5 μm

Fig. 3.

a–f The Dp71 (green) and AQP4 (red) confocal analysis shows the reduction of Dp71 fluorescence in DMD-neurons (d, e) compared with a strong Dp71 signal in the control ones (a, b) while the AQP4 fluorescence is missing in DMD neurons (d, f) and weakly expressed in the control (a, c). g–n Dys (red) and βDG (green) dual reaction shows a lower βDG signal in DMD neurons (l, n) compared to the control ones (g, i) and a Dys clustering in DMD cytoplasm (l and inset arrow, m), and a diffused signal in the control cytoplasm (g and inset arrow, h). o Morphometric analysis shows a significant reduction of Dp71 and Dys fluorescence intensity in DMD neurons compared to control. p The mRNA expression analysis shows reduction of Dp71, AQP4 mRNA, and an increase of DG and Dys mRNA in DMD neurons compared to control. Scale bar: a–f 12 μm; g–n 20 μm. Data are represented as mean ± SEM

In parallel, immunoblotting experiments show a significant reduction of the Dp71, AQP4, Dys, and βDG protein content (Additional file 1: Figure S4).

Alteration in SERCA2 and Dp71 expression and abnormal Ca²⁺ homeostasis in DMD-hiPSC-derived neurons

To investigate the mechanisms involved in the mental retard in DMD, we investigated SERCA2 expression in hiPSCs and in neurons of the patient and control. SERCA2 and Dp71 dual confocal reaction highlights that in DMD-hiPSCs (Fig. 4a–f) there is a decrease of SERCA2 and Dp71 amount (Fig. 4d–f) compared to the control (Fig. 4a–c). Instead, the neurons (Fig. 4i–p) show an increase of SERCA2 (Fig. 4n, o) and a decrease of Dp71 (Fig. 4n, p) content in DMD (Fig. 4n–p) compared to the control (Fig. 4i–m). Moreover, SERCA2 and Dp71 colocalization was observed both in hiPSCs (Fig. 4a, d) and in neurons (Fig. 4i, n) in the patient (Fig. 4d, n) and control (Fig. 4a, i). These observations were confirmed by morphometric analysis, qPCR (Fig. 4g, q, h, and r), and western blotting analysis (Additional file 1: Figure S4).

Fig. 4.

SERCA2 (green) and Dp71 (red) fluorescence signals decrease and diffuse in DMD hiPSCs cytoplasms (d–f) compared to intense membrane expression in the control (a–c) while SERCA2 signal increases (o) and DP71 decreases (p) in DMD neurons (n–p) compared to control ones (i–m). An orange fluorescence signal of colocalization for SERCA2 and Dp71 is present in hiPSCs (a, d) and neurons (i, n) of both DMD and CTRL. Note a concentrate point SERCA2 expression (n, o arrow) in DMD neuron. Morphometric analysis (g, q) shows a significative reduction of SERCA2 and Dp71 fluorescence intensity in hiPSCs in DMD (g) and significative SERCA2 increase and DP71 decrease in DMD neurons (q). The mRNA expression analysis (h, r) shows reduction of SERCA2 and Dp71 mRNA in DMD hiPSCs (h) and mRNA SERCA2 increase and DP71decrease in DMD neurons (r) compared to the control. Experiments of ER Ca²⁺-depletion kinetics show significative reduction of CPA-induced ER Ca²⁺ release in DMD neurons (t) compared to CTRL neurons (s). Scale bar: a–f, i–p 7.5 μm. Data are represented as mean ± SEM

This increased expression of the SERCA pump in DMD neurons could likely shift the dynamic equilibrium between ER Ca²⁺ accumulation and Ca²⁺ passive leak toward a higher level of intraluminal Ca²⁺. Therefore, we evaluated SERCA2 activity as the passive Ca²⁺ permeability of the ER when the Ca²⁺-ATPase is blocked by CPA. This is a well-known experimental procedure that will increase cytosolic Ca²⁺ level as index of ER Ca²⁺ levels [11, 12]. In Fig. 4s, t, two representative experiments of ER Ca²⁺-depletion kinetics in Fluo-4 loaded control and DMD-neurons are shown. The cells were treated with the SERCA blocker (20 μM CPA) while perfused with Ca²⁺-free medium. Of note, CPA-induced ER Ca²⁺ release was significantly reduced in DMD neurons (Fig. 4t) when compared with control cells (Additional file 1: Figure S4). This evidence does not correlate with the increased expression level of the SERCA pump in DMD neurons and could indicate the fact that in the ER of DMD neurons, the intraluminal Ca²⁺ levels are lower than in the ER of control neurons as previously reported for muscle tissue [13].

Discussion

The investigation of DMD neuropathogenesis in human is hampered by the absence of a satisfactory human model. In the present study, we have used the hiPSC technology to generate three glutamatergic sensory neuronal lineages of DMD patient, and we have obtained a cell model able to identify morphostructural and functional alterations in patient’s hiPSCs and neurons cells. The results demonstrated that Dp71 and DAPs alterations were already present in dystrophic stem cells as in neurons and even if some genes were overexpressed, such as βDG in hiPSCs and βDG and Dys in neurons, Dp71 and DAPs proteins were reduced and disarranged in DMD hiPSCs and neurons. We hypothesize that the reduction in Dp71 and DAPs proteins content could be related to activation of ubiquitin-proteasome complex as demonstrated in our previous work on mdx mice [14]. Moreover, the DMD hiPSCs and neurons showed ultrastructural modification similar to that observed in mdx mesenchymal stem cells [15]. DMD is characterized by intracellular Ca²⁺ ([Ca²⁺]i) dyshomeostasis in skeletal and cardiac muscles [16–19]. The association between the lack of dystrophin and intracellular Ca²⁺ dyshomeostasis has been validated also in cerebellar granule neurons isolated from mdx mice [20]. Moreover, the presence of a chronic overload of Ca²⁺ with consequent cytotoxic effect on glutamatergic neurons could be correlated to degenerative neurological diseases. The current study is the first to show that Ca²⁺ dyshomeostasis occurs also in DMD sensorial neurons, as occurs in altered muscle. The elevation in [Ca²⁺]i appears to be due to an increase of Ca²⁺ release from intracellular stores such as sarco/endoplasmic reticulum (SR/ER) [21]. The same cellular dysfunctions were associated with a spatial learning deficit in mdx mice [22]. It is well established that disruption of intracellular Ca²⁺ homeostasis in neurons causes learning and memory dysfunctions, metabolic derangements, and cell death as it has been shown in several chronic diseases [22]. Loss and/or reduction of Dp71 and DAPs are thought to contribute to severity of mental retard [23]. Interestingly, we found that Dp71 co-localized with SERCA2, the main brain protein responsible for the removal of intracellular Ca²⁺, suggesting that functional alteration identified in DMD neurons could be related to Dp71 deficiency in DMD patient with mental retard. Furthermore, the overexpression of SERCA2 in DMD neurons suggests a neuronal mechanism to restore Ca²⁺ level in cytosol. SERCA pump is dysfunctional in severely affected muscles of mdx mice [16], but nothing is known about its functionality in the brain.

In conclusion, the Dp71 partial ablation and disarrangement correlate with abnormal Ca2+ homeostasis in human neurons. This altered molecular pathway may potentially contribute to altered brain function and cognitive deficits in DMD patients. Further studies are needed to clarify whether SERCA2 overexpression or its functional activity are involved in the impairment of ER-Ca2+ handling that we reported in DMD neurons. Identification of this ion channel and improved understanding of its regulation appear essential to better understand the disease for a possible new therapeutic approach.

Abbreviations

AQP4

Water channel aquaporin-4

CPA

Cyclopiazonic acid

CTRL

Control

DAPs

Dp71-associated proteins

Dys

Dp427 dystrophin

ER

Endoplasmic reticulum

hiPSCs

Human-induced pluripotent stem cells

NFH

Neurofilament

PBMC

Peripheral blood mononuclear cells

SERCA2

Ca/ATPasic pump 2 -isoform of brain

TuJ-1

Neuron-specific class III β-tubulin

βDG

Beta-dystroglycan

Authors’ contributions

SR and LV designed and performed the research, conducted the experiments, analyzed the data, and wrote the paper. TA, CR, RT, and ME conducted the molecular and morphologic experiments and analyzed the data. AG and RD conducted the electrophysiological experiments and analyzed the data. PC and JR conducted the cellular experiments. FO and LM were involved in the recruitment of the patient. NR and SD conducted the genetic experiments. DR and MT developed the concept and designed the research. BN directed, designed, and supervised the research and wrote the paper. All authors read and approved the final manuscript.

Ethics approval and consent to participate

The study was approved by the local Ethics Committee at the University of Bari Medical School, and the patient gave its informed consent in accordance with the declaration of Helsinki.

Consent for publication

Not applicable.

Competing interests

The authors declare that they have no competing interests.

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