Table 2.
Classification/annotation of small RNAs in HIST and NC libraries
| Category | HIST sRNAs | NC sRNAs | ||||||
|---|---|---|---|---|---|---|---|---|
| Unique | (%) | Redundant | (%) | Unique | (%) | Redundant | (%) | |
| rRNA | 142,588 | 13.37 | 2,856,748 | 10.25 | 151,074 | 14.30 | 3,330,834 | 16.12 |
| tRNA | 42,591 | 3.99 | 1,143,993 | 4.10 | 34,900 | 3.30 | 789,023 | 3.82 |
| scRNA | 796 | 0.07 | 8178 | 0.03 | 777 | 0.07 | 6108 | 0.03 |
| snRNA | 6533 | 0.61 | 60,646 | 0.22 | 6648 | 0.63 | 59,169 | 0.29 |
| snoRNA | 7540 | 0.71 | 265,995 | 0.95 | 7049 | 0.67 | 236,933 | 1.15 |
| srpRNA | 1619 | 0.15 | 20,165 | 0.07 | 1633 | 0.15 | 22,995 | 0.11 |
| exon_antisense | 3517 | 0.33 | 4665 | 0.02 | 2999 | 0.28 | 3922 | 0.02 |
| exon_sense | 180,213 | 16.90 | 226,294 | 0.81 | 179,548 | 16.99 | 219,397 | 1.06 |
| intron_antisense | 11,691 | 1.10 | 14,701 | 0.05 | 10,414 | 0.99 | 12,811 | 0.06 |
| intron_sense | 81,952 | 7.68 | 121,328 | 0.44 | 93,129 | 8.81 | 128,385 | 0.62 |
| Repeat | 50,441 | 4.73 | 66,747 | 0.24 | 57,451 | 5.44 | 74,215 | 0.36 |
| Unannotated | 537,174 | 50.00 | 23,088,321 | 83.00 | 510,863 | 48.00 | 15,774,525 | 76.00 |
| Total clean reads | 1,0,66,655 | 100 | 27,877,781 | 100 | 1,056,485 | 100 | 20,658,317 | 100 |