Table 3.
The most abundant known miRNAs obtained from HIST and NC libraries
| miRNA name | Sequence | Length | Read count | miRNA family | miRNA orthologs | |
|---|---|---|---|---|---|---|
| HIST | NC | |||||
| let-7c | TGAGGTAGTAGGTTGTATGGTT | 22 | 2,314,478 | 1,205,674 | let-7 | hsa odi pma csa cin |
| miR-9a-5p | TCTTTGGTTATCTAGCTGTATGA | 23 | 1,889,962 | 1,416,714 | mir-9 | dme |
| let-7f | TGAGGTAGTAGATTGTATAGTT | 22 | 1,754,130 | 1,414,639 | let-7 | hsa |
| miR-378 | ACTGGACTTGGAGTCAGAAGGC | 22 | 1,544,707 | 1,452,656 | mir-378 | hsa ppy cfa |
| miR-143 | TGAGATGAAGCACTGTAGCT | 20 | 1,526,043 | 1,139,450 | mir-143 | rno mmu xtr pma |
| miR-182 | TTTGGCAATGGTAGAACTCACACCG | 25 | 1,638,730 | 326,627 | mir-182 | sko lgi cte mmu eca dre hsa spu |
| miR-9 | TCTTTGGTTATCTAGCTGTATG | 22 | 1,103,879 | 751,193 | mir-9 | egr sko bma xtr |
| let-7 | TGAGGTAGTAGGTTGTATAGTT | 22 | 804,332 | 490,827 | let-7 | cel aga sja spu |
| miR-30a | TGTAAACATCCTCGACTGGAAGC | 23 | 607,712 | 488,589 | mir-30 | hsa dre oan |
| miR-30d | TGTAAACATCCCCGACTGGAAGC | 23 | 594,387 | 413,656 | mir-30 | hsa pma oan bta |
| let-7b | TGAGGTAGTAGGTTGTGTGGTT | 22 | 638,961 | 307,685 | let-7 | hsa odi pma xtr cin |
| miR-127 | TCGGATCCGTCTGAGCTTGGC | 21 | 491,449 | 399,720 | mir-127 | mmu oar |
| miR-183 | TATGGCACTGGTAGAATTCACT | 22 | 623,293 | 125,748 | mir-183 | lgi mmu gga sko csa |
| let-7-5p | TGAGGTAGTAGGTTGTATAGT | 21 | 339,133 | 220,610 | let-7 | tca dme |
| miR-103a | AGCAGCATTGTACAGGGCTATGA | 23 | 280,569 | 274,894 | mir-103 | hsa pma |
| miR-24 | TGGCTCAGTTCAGCAGGAACAGT | 23 | 308,093 | 212,293 | mir-24 | hsa cfa |
| miR-26a | TTCAAGTAATCCAGGATAGG | 20 | 285,016 | 218,341 | mir-26 | hsa gga |
| miR-379 | TGGTAGACTATGGAACGTAGG | 21 | 272,494 | 226,457 | mir-379 | hsa |
| miR-99b | CACCCGTAGAACCGACCTTGC | 21 | 279,118 | 167,000 | mir-99 | mmu |
| let-7g | TGAGGTAGTAGTTTGTACAGTT | 22 | 227,155 | 185,745 | let-7 | mmu gga xtr dre |