Table 3.
NLR coverage in 12 potato varieties
| ID | Alouette | Bionica | Cara | Craigs Snow White | Innovator | King Edward | Pentland Ace | Pentland Dell | Picasso | Spunta | Toluca | 2573 (2) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Gene name | ||||||||||||
| Nem‐Gpa2 | 29.81 | 21.51 | 98.72 | 27.49 | 18.18 | 58.06 | 8.97 | 30.31 | 97.95 | 0.00 | 0.00 | 7.69 |
| Nem‐Gpa2 ΔC2922 | 29.81 | 21.51 | 100.00 | 27.49 | 18.18 | 70.70 | 8.97 | 30.31 | 100.00 | 0.00 | 0.00 | 7.69 |
| Rpi‐R1 | 9.34 | 19.21 | 100.00 | 100.00 | 99.20 | 45.73 | 0.00 | 100.00 | 100.00 | 100.00 | 0.00 | 100.00 |
| Rpi‐R1 ΔT4109 | 9.34 | 19.21 | 100.00 | 99.90 | 100.00 | 45.73 | 0.00 | 99.66 | 99.24 | 99.88 | 0.00 | 100.00 |
| Rpi‐R2 | 0.00 | 58.27 | 0.00 | 9.89 | 50.00 | 7.41 | 8.39 | 58.20 | 4.61 | 0.00 | 0.00 | 57.21 |
| Rpi‐R2‐like | 8.25 | 96.97 | 0.00 | 34.32 | 100.00 | 18.00 | 0.00 | 97.37 | 9.79 | 0.00 | 0.00 | 93.95 |
| Rpi‐R3a | 100.00 | 100.00 | 100.00 | 0.00 | 100.00 | 63.03 | 100.00 | 100.00 | 100.00 | 6.24 | 17.80 | 100.00 |
| Rpi‐R3b | 99.12 | 99.66 | 98.94 | 10.93 | 97.72 | 66.07 | 96.99 | 99.92 | 99.33 | 8.54 | 20.12 | 99.12 |
| Rpi‐R3b G3111 | 99.43 | 99.79 | 99.07 | 10.93 | 98.65 | 73.16 | 99.22 | 100.00 | 99.66 | 8.54 | 28.79 | 99.64 |
| Rpi‐R3b G1696/G3111 | 100.00 | 100.00 | 100.00 | 10.93 | 100.00 | 79.57 | 100.00 | 100.00 | 100.00 | 8.54 | 28.79 | 100.00 |
| Rpi‐R8 | 41.92 | 46.04 | 19.42 | 46.12 | 25.84 | 29.00 | 31.19 | 38.44 | 20.41 | 28.28 | 27.23 | 100.00 |
| Rpi‐R9a | 32.41 | 50.35 | 27.89 | 47.49 | 5.13 | 50.23 | 47.07 | 40.82 | 36.65 | 39.58 | 51.58 | 100.00 |
| Rpi‐abpt | 8.27 | 96.14 | 0.00 | 24.86 | 93.77 | 18.05 | 8.39 | 95.82 | 9.81 | 0.00 | 0.00 | 96.30 |
| Rpi‐abpt T86 | 8.27 | 100.00 | 0.00 | 24.86 | 97.48 | 18.05 | 8.39 | 100.00 | 9.81 | 0.00 | 0.00 | 100.00 |
| Rpi‐blb1 | 0.00 | 4.12 | 0.00 | 0.00 | 0.00 | 9.10 | 0.00 | 13.89 | 12.14 | 0.00 | 0.00 | 0.00 |
| Rpi‐blb2 | 5.32 | 100.00 | 9.69 | 0.00 | 3.01 | 0.00 | 0.00 | 0.00 | 32.03 | 0.00 | 100.00 | 6.25 |
| Rpi‐blb3 | 0.00 | 55.03 | 0.00 | 9.87 | 44.85 | 0.00 | 0.00 | 50.47 | 9.79 | 0.00 | 0.00 | 44.65 |
| Rpi‐pta1 | 0.00 | 4.12 | 0.00 | 0.00 | 0.00 | 9.11 | 0.00 | 13.90 | 18.63 | 0.00 | 0.00 | 0.00 |
| Rpi‐pta1 A2012 | 0.00 | 4.12 | 0.00 | 0.00 | 0.00 | 9.11 | 0.00 | 13.90 | 18.63 | 0.00 | 0.00 | 0.00 |
| Rpi‐sto1 | 0.00 | 4.06 | 0.00 | 0.00 | 0.00 | 4.45 | 0.00 | 0.00 | 12.13 | 0.00 | 0.00 | 0.00 |
| Rpi‐sto1 T3144 | 0.00 | 4.06 | 0.00 | 0.00 | 0.00 | 4.45 | 0.00 | 0.00 | 12.13 | 0.00 | 0.00 | 0.00 |
| Rpi‐vnt1.1 | 95.48 | 21.71 | 0.11 | 8.78 | 9.30 | 0.00 | 7.47 | 8.82 | 7.14 | 6.95 | 0.00 | 0.00 |
| Rpi‐vnt1.1 A2056 | 88.15 | 21.71 | 0.11 | 8.78 | 9.30 | 0.00 | 7.47 | 8.82 | 7.14 | 6.95 | 0.00 | 0.00 |
| Rpi‐vnt1.3 | 100.00 | 21.38 | 0.11 | 8.65 | 9.16 | 0.00 | 7.36 | 8.68 | 7.03 | 6.84 | 0.00 | 0.00 |
| Virus‐Rx | 23.51 | 22.20 | 100.00 | 15.89 | 30.77 | 67.16 | 11.69 | 22.82 | 100.00 | 21.87 | 16.16 | 12.35 |
DRenSeq was conducted on 12 individual potato varieties. The name of the varieties and nucleotide‐binding, leucine‐rich‐repeat resistances (NLR) effective against diverse pathogens such as nematodes (Nem), late blight (Rpi) and viruses (Virus) are shown. The representation of individual resistance genes was calculated by extracting the sequence coverage of dRenSeq‐mapped reads to the reference coding DNA sequence (CDS). Highlighted in green are resistance genes that achieved 100% representation and are therefore classified as ‘present’.