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. 2019 Jan 10;9:1902. doi: 10.3389/fphys.2018.01902

Table 2.

Characteristics of included studies on vitamin D receptor gene polymorphisms and polycystic ovary syndrome risk.

References Country/region Racial Source of controls Case Control Genotype distribution Genotyping methods P for HWE MAF in control NOS
Case Control
Fok I C/T (rs10735810)
CC CT TT CC CT TT
Mahmoudi, 2009 Iran Caucasian Hospital-B 162 162 83 67 12 96 59 7 PCR-RFLP 0.58 0.23 8
Wehr et al., 2011 Austria Caucasian Hospital-B 538 135 215 241 82 53 60 22 Genotyping assay 0.47 0.39 8
Bagheri et al., 2012 Iran Caucasian Healthy-B 46 46 22 20 4 29 15 2 PCR-RFLP 0.97 0.21 7
Jedrzejuk et al., 2015 Poland Caucasian Healthy-B 90 98 28 51 11 23 50 25 PCR- SNaPshot 0.84 0.51 7
Dasgupta et al., 2015 India Asian Healthy-B 250 250 155 85 10 153 82 15 PCR-RFLP 0.37 0.22 8
Mahmoudi et al., 2015 Iran Caucasian Healthy-B 35 35 16 17 2 24 10 1 PCR-RFLP 0.97 0.17 8
Cao and Tu, 2016 China Asian Hospital-B 120 120 70 40 10 65 45 10 PCR-RFLP 0.60 0.27 7
BsmI A/G (rs1544410)
AA AG GG AA AG GG
Mahmoudi, 2009 Iran Caucasian Hospital-B 162 162 24 85 53 18 91 53 PCR-RFLP 0.02 0.61 8
Wehr et al., 2011 Austria Caucasian Hospital-B 537 137 77 244 216 22 66 49 Genotyping assay 0.98 0.60 8
Bagheri et al., 2012 Iran Caucasian Healthy-B 46 46 15 27 4 20 24 2 PCR-RFLP 0.12 0.30 7
Jedrzejuk et al., 2015 Poland Caucasian Healthy-B 90 98 14 45 31 13 42 43 PCR- SNaPshot 0.59 0.65 7
Mahmoudi et al., 2015 Iran Caucasian Healthy-B 35 35 10 12 13 5 23 7 PCR-RFLP 0.06 0.53 8
Cao and Tu, 2016 China Asian Hospital-B 120 120 23 60 37 40 55 25 PCR-RFLP 0.45 0.44 7
Siddamalla et al., 2018 India Asian Hospital-B 95 130 35 45 15 72 41 17 PCR-RFLP 0.01 0.29 7
ApaI A/C (rs7975232)
AA AC CC AA AC CC
Mahmoudi, 2009 Iran Caucasian Hospital-B 162 162 58 68 36 49 90 23 PCR-RFLP 0.07 0.42 8
Wehr et al., 2011 Austria Caucasian Hospital-B 543 145 142 274 127 48 60 37 Genotyping assay 0.04 0.46 7
El-Shal et al., 2013 Egypt Caucasian Healthy-B 150 150 63 65 22 68 64 18 PCR-RFLP 0.62 0.33 8
Jedrzejuk et al., 2015 Poland Caucasian Healthy-B 90 98 19 52 19 32 49 17 PCR- SNaPshot 0.81 0.42 7
Dasgupta et al., 2015 India Asian Healthy-B 250 250 117 120 13 122 116 12 PCR-RFLP 0.02 0.28 7
Mahmoudi et al., 2015 Iran Caucasian Healthy-B 35 35 15 11 9 8 21 6 PCR-RFLP 0.23 0.47 8
Cao and Tu, 2016 China Asian Hospital-B 120 120 22 58 40 39 55 26 PCR-RFLP 0.43 0.45 7
Siddamalla et al., 2018 India Asian Hospital-B 95 130 42 21 32 70 35 25 PCR-RFLP < 0.01 0.33 7
TaqI T/C (rs731236)
TT TC CC TT TC CC
Mahmoudi, 2009 Iran Caucasian Hospital-B 162 162 71 71 20 72 76 14 PCR-RFLP 0.33 0.32 8
Wehr et al., 2011 Austria Caucasian Hospital-B 536 137 226 238 72 49 65 23 Genotyping assay 0.85 0.41 8
Bagheri et al., 2013 Iran Caucasian Healthy-B 38 38 16 14 8 17 19 2 PCR-RFLP 0.26 0.30 7
El-Shal et al., 2013 Egypt Caucasian Healthy-B 150 150 40 74 36 69 61 20 PCR-RFLP 0.27 0.34 8
Jedrzejuk et al., 2015 Poland Caucasian Healthy-B 90 98 37 45 8 49 37 12 PCR- SNaPshot 0.24 0.31 7
Dasgupta et al., 2015 India Asian Healthy-B 250 250 112 91 47 109 104 37 PCR-RFLP 0.14 0.36 8
Mahmoudi et al., 2015 Iran Caucasian Healthy-B 35 35 15 14 6 15 16 4 PCR-RFLP 0.93 0.34 8
Cao and Tu, 2016 China Asian Hospital-B 120 120 57 52 11 40 72 8 PCR-RFLP < 0.01 0.37 6
Siddamalla et al., 2018 India Asian Hospital-B 95 130 40 31 24 71 42 17 PCR-RFLP 0.01 0.29 7

HWE in control. MAF, Minor allele frequency in control group; Hospital-B, Hospital-based control; Healthy-B, Healthy-based control.