Table 2.
References | Country/region | Racial | Source of controls | Case | Control | Genotype distribution | Genotyping methods | P for HWE | MAF in control | NOS | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Case | Control | ||||||||||||||
Fok I C/T (rs10735810) | |||||||||||||||
CC | CT | TT | CC | CT | TT | ||||||||||
Mahmoudi, 2009 | Iran | Caucasian | Hospital-B | 162 | 162 | 83 | 67 | 12 | 96 | 59 | 7 | PCR-RFLP | 0.58 | 0.23 | 8 |
Wehr et al., 2011 | Austria | Caucasian | Hospital-B | 538 | 135 | 215 | 241 | 82 | 53 | 60 | 22 | Genotyping assay | 0.47 | 0.39 | 8 |
Bagheri et al., 2012 | Iran | Caucasian | Healthy-B | 46 | 46 | 22 | 20 | 4 | 29 | 15 | 2 | PCR-RFLP | 0.97 | 0.21 | 7 |
Jedrzejuk et al., 2015 | Poland | Caucasian | Healthy-B | 90 | 98 | 28 | 51 | 11 | 23 | 50 | 25 | PCR- SNaPshot | 0.84 | 0.51 | 7 |
Dasgupta et al., 2015 | India | Asian | Healthy-B | 250 | 250 | 155 | 85 | 10 | 153 | 82 | 15 | PCR-RFLP | 0.37 | 0.22 | 8 |
Mahmoudi et al., 2015 | Iran | Caucasian | Healthy-B | 35 | 35 | 16 | 17 | 2 | 24 | 10 | 1 | PCR-RFLP | 0.97 | 0.17 | 8 |
Cao and Tu, 2016 | China | Asian | Hospital-B | 120 | 120 | 70 | 40 | 10 | 65 | 45 | 10 | PCR-RFLP | 0.60 | 0.27 | 7 |
BsmI A/G (rs1544410) | |||||||||||||||
AA | AG | GG | AA | AG | GG | ||||||||||
Mahmoudi, 2009 | Iran | Caucasian | Hospital-B | 162 | 162 | 24 | 85 | 53 | 18 | 91 | 53 | PCR-RFLP | 0.02 | 0.61 | 8 |
Wehr et al., 2011 | Austria | Caucasian | Hospital-B | 537 | 137 | 77 | 244 | 216 | 22 | 66 | 49 | Genotyping assay | 0.98 | 0.60 | 8 |
Bagheri et al., 2012 | Iran | Caucasian | Healthy-B | 46 | 46 | 15 | 27 | 4 | 20 | 24 | 2 | PCR-RFLP | 0.12 | 0.30 | 7 |
Jedrzejuk et al., 2015 | Poland | Caucasian | Healthy-B | 90 | 98 | 14 | 45 | 31 | 13 | 42 | 43 | PCR- SNaPshot | 0.59 | 0.65 | 7 |
Mahmoudi et al., 2015 | Iran | Caucasian | Healthy-B | 35 | 35 | 10 | 12 | 13 | 5 | 23 | 7 | PCR-RFLP | 0.06 | 0.53 | 8 |
Cao and Tu, 2016 | China | Asian | Hospital-B | 120 | 120 | 23 | 60 | 37 | 40 | 55 | 25 | PCR-RFLP | 0.45 | 0.44 | 7 |
Siddamalla et al., 2018 | India | Asian | Hospital-B | 95 | 130 | 35 | 45 | 15 | 72 | 41 | 17 | PCR-RFLP | 0.01 | 0.29 | 7 |
ApaI A/C (rs7975232) | |||||||||||||||
AA | AC | CC | AA | AC | CC | ||||||||||
Mahmoudi, 2009 | Iran | Caucasian | Hospital-B | 162 | 162 | 58 | 68 | 36 | 49 | 90 | 23 | PCR-RFLP | 0.07 | 0.42 | 8 |
Wehr et al., 2011 | Austria | Caucasian | Hospital-B | 543 | 145 | 142 | 274 | 127 | 48 | 60 | 37 | Genotyping assay | 0.04 | 0.46 | 7 |
El-Shal et al., 2013 | Egypt | Caucasian | Healthy-B | 150 | 150 | 63 | 65 | 22 | 68 | 64 | 18 | PCR-RFLP | 0.62 | 0.33 | 8 |
Jedrzejuk et al., 2015 | Poland | Caucasian | Healthy-B | 90 | 98 | 19 | 52 | 19 | 32 | 49 | 17 | PCR- SNaPshot | 0.81 | 0.42 | 7 |
Dasgupta et al., 2015 | India | Asian | Healthy-B | 250 | 250 | 117 | 120 | 13 | 122 | 116 | 12 | PCR-RFLP | 0.02 | 0.28 | 7 |
Mahmoudi et al., 2015 | Iran | Caucasian | Healthy-B | 35 | 35 | 15 | 11 | 9 | 8 | 21 | 6 | PCR-RFLP | 0.23 | 0.47 | 8 |
Cao and Tu, 2016 | China | Asian | Hospital-B | 120 | 120 | 22 | 58 | 40 | 39 | 55 | 26 | PCR-RFLP | 0.43 | 0.45 | 7 |
Siddamalla et al., 2018 | India | Asian | Hospital-B | 95 | 130 | 42 | 21 | 32 | 70 | 35 | 25 | PCR-RFLP | < 0.01 | 0.33 | 7 |
TaqI T/C (rs731236) | |||||||||||||||
TT | TC | CC | TT | TC | CC | ||||||||||
Mahmoudi, 2009 | Iran | Caucasian | Hospital-B | 162 | 162 | 71 | 71 | 20 | 72 | 76 | 14 | PCR-RFLP | 0.33 | 0.32 | 8 |
Wehr et al., 2011 | Austria | Caucasian | Hospital-B | 536 | 137 | 226 | 238 | 72 | 49 | 65 | 23 | Genotyping assay | 0.85 | 0.41 | 8 |
Bagheri et al., 2013 | Iran | Caucasian | Healthy-B | 38 | 38 | 16 | 14 | 8 | 17 | 19 | 2 | PCR-RFLP | 0.26 | 0.30 | 7 |
El-Shal et al., 2013 | Egypt | Caucasian | Healthy-B | 150 | 150 | 40 | 74 | 36 | 69 | 61 | 20 | PCR-RFLP | 0.27 | 0.34 | 8 |
Jedrzejuk et al., 2015 | Poland | Caucasian | Healthy-B | 90 | 98 | 37 | 45 | 8 | 49 | 37 | 12 | PCR- SNaPshot | 0.24 | 0.31 | 7 |
Dasgupta et al., 2015 | India | Asian | Healthy-B | 250 | 250 | 112 | 91 | 47 | 109 | 104 | 37 | PCR-RFLP | 0.14 | 0.36 | 8 |
Mahmoudi et al., 2015 | Iran | Caucasian | Healthy-B | 35 | 35 | 15 | 14 | 6 | 15 | 16 | 4 | PCR-RFLP | 0.93 | 0.34 | 8 |
Cao and Tu, 2016 | China | Asian | Hospital-B | 120 | 120 | 57 | 52 | 11 | 40 | 72 | 8 | PCR-RFLP | < 0.01 | 0.37 | 6 |
Siddamalla et al., 2018 | India | Asian | Hospital-B | 95 | 130 | 40 | 31 | 24 | 71 | 42 | 17 | PCR-RFLP | 0.01 | 0.29 | 7 |
HWE in control. MAF, Minor allele frequency in control group; Hospital-B, Hospital-based control; Healthy-B, Healthy-based control.