Table 2.
Functional summary of target mRNAs of 21 differentially expressed lncRNAs in A. digitifera
| LncRNA ID | Interaction relationships | Uniprot Annotation of target mRNAs | Functional analysis of target mRNAs by David |
|---|---|---|---|
| MSTRG.13003.1 | 129 | lung epithelial cell differentiation; protein kinase activity; protein binding; Metabolic pathways; phosphorylation; nucleobase-containing compound metabolic process; cytoskeleton organization; GTP binding; positive regulation of protein catabolic process; GTPase activity | |
| MSTRG.34897.1 | 19 | protein K11-linked ubiquitination | |
| MSTRG.35238.1 | 16 | cytochrome-c oxidase activity; mitochondrion; mitochondrial inner membrane; mitochondrial respiratory chain complex IV; proton-transporting ATPase activity; hydrogen ion transmembrane transport | |
| MSTRG.17668.1 | 10 | ATP synthase subunit epsilon, mitochondrial; Maternal protein exuperantia; COP9 signalosome complex subunit 9; 60S ribosomal protein L37a; 40S ribosomal protein S29;-;-;-;-;- | |
| MSTRG.14204.1 | 9 | ATP synthase subunit epsilon, mitochondrial; 60S ribosomal protein L37a; 40S ribosomal protein S29; 60S ribosomal protein L39–1;-;-;-;-;- | |
| MSTRG.16403.1 | 8 | PDZ and LIM domain protein Zasp; Golgi-associated plant pathogenesis-related protein 1; WW domain-binding protein 2; Outer dense fiber protein 1;-;-;-;- | |
| MSTRG.39215.1 | 6 | -;-;-;-;-;- | |
| MSTRG.34265.1 | 5 | Collagen triple helix repeat-containing protein 1; Uncharacterized protein YML079W; Metallo-beta-lactamase domain-containing protein 2;-;- | |
| MSTRG.6940.1 | 5 | Ribosome; structural constituent of ribosome | |
| MSTRG.36289.1 | 4 | V-type proton ATPase subunit e; Chitobiosyldiphosphodolichol beta-mannosyltransferase; Transcription initiation factor TFIID subunit 10;- | |
| MSTRG.9806.1 | 3 | ATP synthase subunit epsilon, mitochondrial;-;- | |
| MSTRG.19793.1 | 2 | -;- | |
| MSTRG.33259.1 | 2 | Cilia- and flagella-associated protein 20; Protein FAM183B | |
| MSTRG.3737.1 | 2 | Ubiquitin-like protein; c-Myc-binding protein | |
| MSTRG.7448.1 | 2 | -; Cytochrome c oxidase subunit 6B1 | |
| MSTRG.13804.1 | 1 | – | |
| MSTRG.21959.1 | 1 | – | |
| MSTRG.29713.1 | 1 | 39S ribosomal protein L15, mitochondrial | |
| MSTRG.32535.1 | 1 | Protein TAR1 | |
| MSTRG.38024.1 | 1 | 60S ribosomal protein L23 | |
| MSTRG.4196.1 | 1 | ATP synthase subunit delta, mitochondrial |