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. 2019 Jan 16;19:24. doi: 10.1186/s12862-018-1343-6

Table 2.

Results of the bottleneck analysis and effective population size for the 19 populations of Petrosia ficiformis

Pop. ϴ CI 95% A Ae rA Ho He FIS HWE Wilcoxon rank test
(2t_SMM) (2t_TPM)
SMI 0.003 0.0003–0.0048 30 1.938 2.567 0.383 0.403 0.089 ** 0.426 0.820
FLO 0.020 0.0054–0.0228 24 1.532 2.123 0.307 0.341 0.156 ** 0.301 0.570
MAD 0.085 0.0800–0.0953 38 2.322 3.019 0.393 0.48 0.217 *** 0.160 0.922
CAN 0.050 0.036–0.0530 41 3.016 3.888 0.636 0.618 0.045 ** 0.432 0.160
CAR 0.084 0.0710–0.0970 49 2.694 3.361 0.579 0.54 −0.052 ns 0.024 0.625
CART 0.092 0.0803–0.0980 47 2.707 4.347 0.586 0.581 0.068 ns 0.014 0.105
BLA 0.093 0.0884–0.0980 81 3.901 4.847 0.681 0.718 0.071 *** 0.001 0.084
ULL 0.085 0.0800–0.0976 37 2.233 2.855 0.613 0.503 −0.191 ** 0.625 0.625
FEL 0.036 0.0444–0.0601 51 3.262 3.997 0.658 0.624 −0.01 ns 0.625 0.625
ESC 0.003 0.0000–0.0150 40 2.732 3.552 0.627 0.56 −0.065 ns 1.000 0.625
MRS 0.036 0.0102–0.0174 50 2.62 3.922 0.489 0.56 0.173 *** 0.003 0.010
NIZ 0.040 0.0438–0.0562 48 2.478 3.563 0.551 0.562 0.057 *** 0.005 0.019
LIG 0.018 0.0002–0.0274 60 3.964 4.736 0.509 0.706 0.311 *** 0.922 0.193
NAP 0.061 0.0498–0.0845 53 3.342 4.145 0.677 0.682 0.042 ns 0.625 0.032
SLO 0.090 0.0832–0.1000 41 2.919 3.567 0.7 0.633 −0.065 ns 0.322 0.014
SCRO 0.029 0.0060–0.0223 53 2.775 3.804 0.574 0.553 −0.001 ns 0.007 0.105
JECRO 0.096 0.0854–0.1000 55 2.96 4.181 0.548 0.617 0.151 *** 0.001 0.084
CRE 0.007 0.0000–0.0133 48 2.822 3.926 0.627 0.556 −0.075 ns 0.014 0.131
ISR 0.007 0.0007–0.0133 77 4.276 4.97 0.778 0.738 −0.028 ns 0.010 1.000

Abbreviations: Pop population, ϴ, Theta; 25–75% confidence intervals for ϴ, Ns number of individuals, A number of alleles, Ae Number of effective alleles, rA number of alleles after rarefaction, Ho observed heterozygosity, He expected heterozygosity, FIS inbreeding coefficient, HWE deviation from Hardy-Weinberg equilibrium, ns not significant; * = p < 0.05; ** = p < 0.01; *** = p < 0.001; TPM, two-phase model; SMM, stepwise-mutation model