Table 2.
Results of the bottleneck analysis and effective population size for the 19 populations of Petrosia ficiformis
Pop. | ϴ | CI 95% | A | Ae | rA | Ho | He | FIS | HWE | Wilcoxon rank test | |
---|---|---|---|---|---|---|---|---|---|---|---|
(2t_SMM) | (2t_TPM) | ||||||||||
SMI | 0.003 | 0.0003–0.0048 | 30 | 1.938 | 2.567 | 0.383 | 0.403 | 0.089 | ** | 0.426 | 0.820 |
FLO | 0.020 | 0.0054–0.0228 | 24 | 1.532 | 2.123 | 0.307 | 0.341 | 0.156 | ** | 0.301 | 0.570 |
MAD | 0.085 | 0.0800–0.0953 | 38 | 2.322 | 3.019 | 0.393 | 0.48 | 0.217 | *** | 0.160 | 0.922 |
CAN | 0.050 | 0.036–0.0530 | 41 | 3.016 | 3.888 | 0.636 | 0.618 | 0.045 | ** | 0.432 | 0.160 |
CAR | 0.084 | 0.0710–0.0970 | 49 | 2.694 | 3.361 | 0.579 | 0.54 | −0.052 | ns | 0.024 | 0.625 |
CART | 0.092 | 0.0803–0.0980 | 47 | 2.707 | 4.347 | 0.586 | 0.581 | 0.068 | ns | 0.014 | 0.105 |
BLA | 0.093 | 0.0884–0.0980 | 81 | 3.901 | 4.847 | 0.681 | 0.718 | 0.071 | *** | 0.001 | 0.084 |
ULL | 0.085 | 0.0800–0.0976 | 37 | 2.233 | 2.855 | 0.613 | 0.503 | −0.191 | ** | 0.625 | 0.625 |
FEL | 0.036 | 0.0444–0.0601 | 51 | 3.262 | 3.997 | 0.658 | 0.624 | −0.01 | ns | 0.625 | 0.625 |
ESC | 0.003 | 0.0000–0.0150 | 40 | 2.732 | 3.552 | 0.627 | 0.56 | −0.065 | ns | 1.000 | 0.625 |
MRS | 0.036 | 0.0102–0.0174 | 50 | 2.62 | 3.922 | 0.489 | 0.56 | 0.173 | *** | 0.003 | 0.010 |
NIZ | 0.040 | 0.0438–0.0562 | 48 | 2.478 | 3.563 | 0.551 | 0.562 | 0.057 | *** | 0.005 | 0.019 |
LIG | 0.018 | 0.0002–0.0274 | 60 | 3.964 | 4.736 | 0.509 | 0.706 | 0.311 | *** | 0.922 | 0.193 |
NAP | 0.061 | 0.0498–0.0845 | 53 | 3.342 | 4.145 | 0.677 | 0.682 | 0.042 | ns | 0.625 | 0.032 |
SLO | 0.090 | 0.0832–0.1000 | 41 | 2.919 | 3.567 | 0.7 | 0.633 | −0.065 | ns | 0.322 | 0.014 |
SCRO | 0.029 | 0.0060–0.0223 | 53 | 2.775 | 3.804 | 0.574 | 0.553 | −0.001 | ns | 0.007 | 0.105 |
JECRO | 0.096 | 0.0854–0.1000 | 55 | 2.96 | 4.181 | 0.548 | 0.617 | 0.151 | *** | 0.001 | 0.084 |
CRE | 0.007 | 0.0000–0.0133 | 48 | 2.822 | 3.926 | 0.627 | 0.556 | −0.075 | ns | 0.014 | 0.131 |
ISR | 0.007 | 0.0007–0.0133 | 77 | 4.276 | 4.97 | 0.778 | 0.738 | −0.028 | ns | 0.010 | 1.000 |
Abbreviations: Pop population, ϴ, Theta; 25–75% confidence intervals for ϴ, Ns number of individuals, A number of alleles, Ae Number of effective alleles, rA number of alleles after rarefaction, Ho observed heterozygosity, He expected heterozygosity, FIS inbreeding coefficient, HWE deviation from Hardy-Weinberg equilibrium, ns not significant; * = p < 0.05; ** = p < 0.01; *** = p < 0.001; TPM, two-phase model; SMM, stepwise-mutation model