Table 1.
Gene | Strand | Location | Size (bp) | Anti codon | Start codon | Stop codon | IGN |
---|---|---|---|---|---|---|---|
cox1 | + | 1–1536 | 1536 | — | ATA | TAA | 0 |
nad3 | + | 1537–1890 | 354 | — | ATG | TAA | 25 |
cox2 | + | 1916–2584 | 669 | — | ATA | TAA | 10 |
trnD | + | 2595–2661 | 67 | GAC | — | — | 0 |
trnR | + | 2662–2723 | 62 | CGA | — | — | 3 |
trnG | + | 2727–2788 | 62 | GGA | — | — | 7 |
trnK | + | 2796–2858 | 63 | AAA | — | — | 13 |
cox3 | + | 2872–3702 | 831 | — | ATA | TAA | 14 |
trnN | + | 3717–3782 | 66 | AAC | — | — | −3 |
trnE | + | 3780–3842 | 63 | GAA | — | — | 0 |
trnI | + | 3843–3909 | 67 | ATC | — | — | 4 |
cytb | + | 3914–5014 | 1101 | — | ATT | TAA | 1 |
trnY | − | 5016–5079 | 64 | TAC | — | — | 17 |
nad2 | + | 5097–6087 | 991 | — | ATC | T(AA) | 0 |
trnW | + | 6088–6152 | 65 | TGA | — | — | 0 |
nad1 | + | 6153–7089 | 937 | — | ATA | T(AA) | −24 |
trnM | + | 7066–7126 | 61 | ATG | — | — | 8 |
trnF | + | 7135–7206 | 72 | TTC | — | — | 6 |
rrnS | + | 7213–7935 | 723 | — | — | — | 1 |
atp8 | − | 7937–8152 | 216 | — | ATT | TAA | 13 |
atp6 | + | 8166–8777 | 612 | — | ATG | TAG | 0 |
trnL1 | + | 8778–8841 | 64 | CTA | — | — | 5 |
trnT | + | 8847–8906 | 60 | ACA | — | — | −1 |
trnQ | + | 8906–8974 | 69 | CAA | — | — | 10 |
trnP | − | 8985–9050 | 66 | CCA | — | — | 8 |
trnA | + | 9059–9121 | 63 | GCA | — | — | 10 |
nad5 | − | 9132–10817 | 1686 | — | ATA | TAA | 0 |
trnH | − | 10818–10877 | 60 | CAC | — | — | 2 |
nad4 | − | 10880–12178 | 1299 | — | ATT | TAA | 2 |
nad4L | − | 12181–12459 | 279 | — | ATG | TAA | 0 |
CR2 | + | 12460–12759 | 300 | — | — | — | 0 |
trnV | + | 12760–12819 | 60 | GTA | — | — | 0 |
CR1 | + | 12820–13447 | 628 | — | — | — | 0 |
nad6 | + | 13448–13918 | 471 | — | ATT | TAA | 1 |
rrnL | + | 13920–15004 | 1085 | — | — | — | 1 |
trnS1 | + | 15006–15069 | 64 | TCA | — | — | 0 |
trnC | + | 15070–15129 | 60 | TGC | — | — | 0 |
trnL2 | + | 15130–15194 | 65 | TTA | — | — | 2 |
trnS2 | + | 15197–15254 | 58 | AGA | — | — | 0 |
The protein coding and ribosomal RNA genes are represented by standard nomenclature, tRNAs are represented as trn followed by the IUPAC-IUB single letter amino acid codes. (+) values in strand represent as heavy (H) and (−) values represent as light (L). IGN represents (+) values as intergenic nucleotides and (−) values as overlapping regions. CR represents the control region.