| Shank 3 | SH3 and multiple ankyrin repeat domains protein 3 |
| SAPAP | synapse-associated protein 90/postsynaptic density-95–associated protein |
| MD | Molecular dynamic simulation |
| DCCM | Dynamic Cross-Correlation Map |
| PCA | Principle Component Analysis |
| FEL | Free Energy Landscape |
| MM/GBSA | Molecular Mechanics/Generalized Born Surface Area |