Table 1.
Sequencing statistics from C. jejuni mRNA RNA-seq data.
| Growth media | Total reads | uniquely-mapped reads to C. jejuni ref. genome (percent of total) | uniquely-mapped antisense reads to C. jejuni ref. genome (percent of total) | uniquely-mapped intergenic reads to C. jejuni ref. genome (percent of total) |
|---|---|---|---|---|
| SUMMARY OF C. jejuni RNA-SEQ DATA AND MAPPING STATISTICS | ||||
| Defined media mean | 17,354,770 | 8,166,591 (47%) | 62,989 (0.36%) | 557,194 (3.2%) |
| Chicken mucus mean | 23,764,292 | 18,933,582 (80%) | 46,384 (0.2%) | 834,402 (3.5%) |
| Turkey mucus mean | 15,026,164 | 12,162,509 (81%) | 19,042 (0.13%) | 578,640 (3.9%) |
| Cow mucus mean | 20,173,514 | 16,927,895 (84%) | 39,313 (0.19%) | 678,646 (3.4%) |
| Pig mucus mean | 15,187,045 | 10,964,828 (72%) | 23,354 (0.15%) | 475,245 (3.1%) |
| Sheep mucus mean | 12,856,358 | 10,680,436 (83%) | 19,802 (0.15%) | 540,695 (4.2%) |
| Total (all replicates) | 417,448,571 | 311,343,359 | 843,531 | 14,659,287 |
The table show the number of reads generated on average for each sample by RNA-seq as well as their distribution among the mapped data.