Table 4.
PRODH (variable substrate is Pro) | GSALDH (variable substrate is P5C) | |||||
---|---|---|---|---|---|---|
PutA | kcat (s−1) | Km (mM) | kcat/Km (M−1·s−1) | kcat (s−1) | Km (μM) | kcat/Km (M−1·s−1) |
BjPutAa | 2 | 31 | 65 | 2.2 | 200 | 11,000 |
BjPutAb | 5.6 | 150 | 37 | |||
BjPutAc | 3.1 | 43 | 72 | 3.4 | 420 | 8100 |
RcPutAd | 20.7 | 54.3 | 383 | 7.3 | 1530 | 4800 |
RcPutAe | 1.0 | 5.6 | 179 | |||
EcPutAf | 5.2 | 42 | 124 | 5.16 | 2000 | 2600 |
EcPutAg | 12 | 100 | 120 | |||
EcPutAg | 6.7 | 230 | 29 | |||
EcPutAh | 0.43 | 1.5 | 287 | |||
GsPutAi | 0.67 | 89 | 7 | 7.5 | 35 | 214,000 |
HpPutAj | 8 | 146 | 56 | |||
CfPutAk | 2.6 | 145 | 18 | 1.7 | 54 | 32,000 |
Proline parameters were determined at 23°C with CoQ1 fixed at 100 μM (121). The P5C parameters were determined at saturating NAD+ concentration.
DCPIP assay (52).
CoQ1 fixed at 250 μM as the electron acceptor in the PRODH assays (4).
Proline parameters were determined with [DCPIP] fixed at 75 μM (70). The P5C parameters were determined with [NAD+] fixed at 200 μM.
CoQ1 as the electron acceptor (3).
Proline parameters were determined by fitting to a two-site ping-pong mechanism with CoQ1 as the electron acceptor (85). The P5C parameters were obtained by fitting to an ordered ternary mechanism (84). kcat for the coupled PRODH-GSALDH reaction from Moxley et al. (84).
Parameters for proline were estimated from the oAB assay with membrane vesicles providing the electron acceptor for the FAD (85).
Proline parameters were determined with menadione fixed at 100 μM (117). The P5C parameters were determined with [NAD+] fixed at 200 μM.
DCPIP assay (53).
PRODH parameters were determined from the DCPIP assay (50).
oAB, o-aminobenzaldehyde; DCPIP, 2,6-dichlorophenolindophenol; FAD, flavin adenine dinucleotide; HpPutA, Helicobacter pylori proline utilization A; PRODH, proline dehydrogenase; RcPutA, Rhodobacter capsulatus proline utilization A.