Table 1.

In-frame TAG codons in Balanophora plastid genes

Gene	Species	Positions of in-frame TAG codons in the SI Appendix, Fig. S4 alignments*	Consensus amino acid at Balanophora TAG codons in non-Balanophora sequences
accD	B. laxiflora	242, 331	W, W
accD	B. reflexa	242, 331	W, W
clpP	B. laxiflora	20, 74, 170	W, W, W
clpP	B. reflexa	20	W
rpl2	B. laxiflora	36, 238, 275	Y, W, W
rpl2	B. reflexa	238, 275	W, W
rpl14	B. laxiflora	107	R
rps2	B. laxiflora	16, 200	W, Y
rps2	B. reflexa	16, 102	W, W/S
rps4	B. laxiflora	69	Gap
rps14	B. laxiflora	93, 104	C, W
rps14	B. reflexa	104	W
ycf1	B. laxiflora	947, 1124, 1233, 1240	Gap, R/K, W, W
ycf1	B. reflexa	13, 158, 933, 1081, 1233, 1240, 2551	C/W, Q, H, L/M, W, W, W
ycf2	B. reflexa	693	Y

^*TAG codons shared by Balanophora species are in bold.