Table 2.
Core genes with the highest number of SNPs in the population.
| Gene name | Product name | Variations (n.) |
|---|---|---|
| gyrB | DNA gyrase subunit B | 5 |
| pvdL | Non-ribosomal peptide synthase, pyoverdine biosynthesis | 5 |
| 15595766 ∗ | Hypothetical protein | 4 |
| aruF | Subunit I of arginine N2-succinyltransferase = ornithine N2-succinyltransferase | 3 |
| ftsJ | Cell division protein FtsJ | 3 |
| chpA | Component of chemotactic signal transduction system | 3 |
| gidA | Glucose-inhibited division protein A | 3 |
| glnE | Glutamate-ammonia-ligase adenylyltransferase | 3 |
| gltB | Glutamate synthase subunit alpha | 3 |
| nagE | N-Acetyl-D-glucosamine phosphotransferase system transporter | 3 |
| parE | DNA topoisomerase IV subunit B | 3 |
| pmrB | Two-component regulator system signal sensor kinase PmrB | 3 |
| cbrA | Two-component sensor CbrA | 3 |
| 15595416 ∗ | Probable aldehyde dehydrogenase | 3 |
| 15595440 ∗ | Probable transcriptional regulator | 3 |
| 15596248 ∗ | Probable transporter | 3 |
| 15596746 ∗ | Probable cation-transporting P-type ATPase | 3 |
| 15597654 ∗ | Hypothetical protein | 3 |
| 15599121 ∗ | Probable major facilitator superfamily (MFS) transporter | 3 |
| 15597414 ∗ | Hypothetical protein | 3 |
The 20 genes listed above belong to the core genome and have at least three different polymorphisms with a moderate impact on the encoded protein according to Snippy analysis (Seemann). Genes under non-neutral pressure are in bold. ∗ Corresponding gene accession number in the reference strain PAO1, when the gene name is not available.