Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2019 Jan 21;2:30. doi: 10.1038/s42003-019-0281-1

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

PMC Copyright notice

Fig. 2 — Transcriptomic analysis of PpSnRK2 downstream factors. a Numbers of ABA-regulated genes and osmostress-regulated genes in wild-type (WT), and the numbers of genes affected in QKO plants. Genes with more than two-fold difference in the expression level between ABA-treated WT and QKO or mannitol-treated WT and QKO (false discovery rate (FDR) ≤ 0.05) were categorized as Decreased or Increased in QKO. b Principal component analysis of gene expression profile in QKO plants. c Fold-changes (FC) (log2) after 12 h of (left) 10 µM ABA treatment or (right) 0.4 M mannitol treatment of whole genes detected in the RNA-seq experiment were plotted. X-axis, WT; y-axis, QKO. d Hierarchical clustering and heatmap analysis were performed for the SnRK2-regulated ABA-inducible genes (SAGs). Gene expression values are represented as relative to the mean of all samples; blue represents lower expression, red represents higher expression (expression range, −3 to 3). Following high-throughput sequencing, data were obtained from the NCBI Sequence Read Archive, Auxin 5 h (SRR3350456), Dehydration 4 h (SRR1707403), Dehydration 12 h (SRR2225592), Heat stress (SRR790663), Salt 4 h (SRR1707400), and Young sporophyte (SRR1553314). e Gene ontology term enrichment analysis was performed against SAGs. Functional enrichment analysis was performed for BLAST best-hit genes of SAGs, which were used to search Arabidopsis TAIR 10 proteins using the BiNGO plug-in in Cytoscape. Gene ontology Slim was used to summarize the network. The intensity of the color indicates significance of nodes based on corrected p-value (5% FDR)