Table 2.

Top ten genera by relative abundance (ra) stratified by clinical state

	Rank	Genus	Mean (%)	Median (%)	Stdev	Prev. (%)	Prev. rank	Hub rank	Metab.a
Baseline	1	Pseudomonas	41.289	46.880	36.709	92.5	7	5	+
	2	Prevotella	12.537	6.257	15.089	100.0	1	4	−
	3	Streptococcus	9.705	5.769	11.204	98.8	3	10	+
	4	Rothia	6.383	2.002	13.623	100.0	2	54	−
	5	Stenotrophomonas	6.289	0.023	20.681	92.5	8	23	+
	6	Veillonella	3.455	1.460	4.994	95.0	5	2	−
	7	Inquilinus	2.990	0.000	11.405	18.8	52	78	+/−
	8	Actinomyces	2.419	0.666	4.089	98.8	4	19	−
	9	Haemophilus	2.364	0.006	10.865	70.0	19	20	+/−
	10	Fusobacterium	1.542	0.101	3.562	82.5	12	22	−
Unwell	1	Pseudomonas	30.790	13.553	34.454	84.2	7	6	+
	2	Prevotella	15.143	6.885	19.744	96.5	3	16	−
	3	Streptococcus	12.074	5.016	14.122	98.8	1	25	+
	4	Stenotrophomonas	9.389	0.096	18.196	87.7	6	9	+
	5	Rothia	5.884	1.776	12.203	98.2	2	14	−
	6	Veillonella	4.898	0.886	8.430	93.6	4	11	−
	7	Burkholderia	4.136	0.009	18.832	66.1	16	128	+
	8	Staphylococcus	2.631	0.015	9.910	81.3	8	99	+/−
	9	Actinomyces	2.138	0.217	4.041	93.0	5	19	−
	10	Inquilinus	1.854	0.000	9.889	19.3	48	33	+/−
PE	1	Pseudomonas	36.645	33.068	36.134	93.8	9	30	+
	2	Streptococcus	14.127	9.869	13.198	100.0	1	22	+
	3	Prevotella	9.927	7.086	12.885	100.0	2	9	−
	4	Rothia	6.466	0.480	15.744	100.0	3	35	−
	5	Fusobacterium	4.849	0.183	11.018	75.0	20	64	−
	6	Haemophilus	4.755	0.023	17.451	100.0	4	52	+/−
	7	Inquilinus	3.512	0.000	8.686	31.3	47	67	+/−
	8	Veillonella	2.894	1.069	3.511	100.0	5	11	−
	9	Actinomyces	2.311	0.517	3.661	100.0	6	1	−
	10	Stenotrophomonas	2.275	0.092	5.406	93.8	10	29	+

¹ Prev. prevalence

^aMetab. = Metabolism: + aerobic; − anaerobic; +/− facultative anaerobic