Table 1.
List of high-confidence proteins identified by nano-LC–MS/MS
| Accession | Description | Coverage | No. of peptides | Gene name |
|---|---|---|---|---|
| P49711-1 | Transcriptional repressor CTCF | 9.5 | 5 | CTCF |
| P35579-1 | Myosin-9 | 54.5 | 91 | MYH9 |
| P35580-3 | Isoform 3 of myosin-10 | 48.6 | 75 | MYH10 |
| P78527 | DNA-dependent protein kinase catalytic subunit | 17.2 | 53 | PRKDC |
| O00571 | ATP-dependent RNA helicase DDX3X | 41.7 | 21 | DDX3X |
| Q08211 | Atp-dependent RNA helicase A | 20.1 | 20 | DHX9 |
| P17844 | Probable ATP-dependent RNA helicase DDX5 | 37.6 | 18 | DDX5 |
| P46940 | Ras GTPase-activating-like protein IQGAP1 | 15.6 | 17 | IQGAP1 |
| P51532-1 | Transcription activator BRG1 | 11.2 | 15 | SMARCA4 |
| Q00839 | Heterogeneous nuclear ribonucleoprotein U | 23.2 | 14 | HNRNPU |
| P05783 | Keratin, type I cytoskeletal 18 | 53.5 | 13 | KRT18 |
| P52272 | Heterogeneous nuclear ribonucleoprotein M | 22.5 | 13 | HNRNPM |
| Q92841 | Probable ATP-dependent RNA helicase DDX17 | 28.4 | 11 | DDX17 |
| P23396-1 | 40S ribosomal protein S3 | 46.5 | 11 | RPS3 |
| P49411 | Elongation factor Tu, mitochondrial | 37.6 | 11 | TUFM |
| P63244 | Guanine nucleotide-binding protein subunit β2-like 1 | 39.7 | 10 | RACK1 |
| P25705-1 | ATP synthase subunit α, mitochondrial | 20.6 | 9 | ATP5A1 |
| P15880 | 40S ribosomal protein S2 | 39.2 | 9 | RPS2 |
| P61247 | 40S ribosomal protein S3a | 39.8 | 9 | RPS3A |
| P46781 | 40S ribosomal protein S9 | 37.1 | 9 | RPS9 |
| P54886 | δ1-Pyrroline-5-carboxylate synthase | 15.2 | 9 | ALDH18A1 |
| P11021 | 78-kDa glucose-regulated protein | 19.6 | 9 | HSPA5 |
| P61313-1 | 60S ribosomal protein L15 | 38.7 | 8 | RPL15 |
| P22087 | rRNA 2′-O-methyltransferase fibrillarin | 23.7 | 8 | FBL |
| P62701 | 40S ribosomal protein S4, X isoform | 27.8 | 8 | RPS4X |
| Q00325-2 | Isoform B of phosphate carrier protein, mitochondrial | 25.8 | 8 | SLC25A3 |
| P11142-1 | Heat shock cognate 71-kDa protein | 18.7 | 8 | HSPA8 |
| P06576 | ATP synthase subunit β, mitochondrial | 25.1 | 8 | ATP5B |
| P31943 | Heterogeneous nuclear ribonucleoprotein H | 29.6 | 7 | HNRNPH1 |
| P40429 | 60S ribosomal protein L13a | 30.5 | 7 | RPL13A |
| P62280 | 40S ribosomal protein S11 | 45.6 | 7 | RPS11 |
| P62263 | 40S ribosomal protein S14 | 39.1 | 7 | RPS14 |
| P10809 | 60-kDa heat shock protein, mitochondrial | 19.9 | 7 | HSPD1 |
| Q02543 | 60S ribosomal protein L18a | 31.8 | 6 | RPL18A |
| P61353 | 60S ribosomal protein L27 | 39.7 | 6 | RPL27 |
| P62266 | 40S ribosomal protein S23 | 49.0 | 6 | RPS23 |
| P27635 | 60S ribosomal protein L10 | 27.6 | 6 | RPL10 |
| P36542-1 | ATP synthase subunit γ, mitochondrial | 29.2 | 6 | ATP5C1 |
| O14497 | AT-rich interactive domain-containing protein 1A | 4.5 | 6 | ARID1A |
| P46777 | 60S ribosomal protein L5 | 23.9 | 6 | RPL5 |
| P84098 | 60S ribosomal protein L19 | 18.9 | 5 | RPL19 |
| P18621-3 | Isoform 3 of 60S ribosomal protein L17 | 22.8 | 5 | RPL17 |
| P62829 | 60S ribosomal protein L23 | 39.3 | 5 | RPL23 |
| P46779-3 | Isoform 3 of 60S ribosomal protein L28 | 19.5 | 5 | RPL28 |
| P62826 | GTP-binding nuclear protein RAN | 24.5 | 5 | RAN |
| Q53GQ0 | Very-long-chain 3-oxoacyl-CoA reductase | 22.4 | 5 | HSD17B12 |
| Q15233 | Non-POU domain-containing octamer-binding protein | 14.4 | 5 | NONO |
| P50454 | Serpin H1 | 20.8 | 5 | SERPINH1 |
| P49207 | 60S ribosomal protein L34 | 23.9 | 5 | RPL34 |
| P34897-1 | Serine hydroxymethyltransferase, mitochondrial | 11.5 | 5 | SHMT2 |
| P42677 | 40S ribosomal protein S27 | 40.5 | 5 | RPS27 |
| Q07666 | GAP-associated tyrosine phosphoprotein p62 | 18.3 | 5 | KHDRBS1 |
| P60660 | Myosin light polypeptide 6 | 42.4 | 5 | MYL6 |
| P62277 | 40S ribosomal protein S13 | 37.1 | 5 | RPS13 |
| P05141 | ADP/ATP translocase 2 | 37.6 | 4 | SLC25A5 |
| P50914 | 60S ribosomal protein L14 | 19.5 | 4 | RPL14 |
| P06748 | Nucleophosmin | 26.9 | 4 | NPM1 |
| P62249 | 40S ribosomal protein S16 | 28.1 | 4 | RPS16 |
| P62910 | 60S ribosomal protein L32 | 29.6 | 4 | RPL32 |
| Q9NZ01-1 | Very-long-chain enoyl-CoA reductase | 12.7 | 4 | TECR |
| Q9H9B4 | Sideroflexin-1 | 14.3 | 4 | SFXN1 |
| P62244 | 40S ribosomal protein S15a | 30.8 | 4 | RPS15A |
| P18077 | 60S ribosomal protein L35a | 22.7 | 4 | RPL35A |
| O95864 | Fatty acid desaturase 2 | 13.3 | 4 | FADS2 |
| P61619 | Protein transport protein Sec61 subunit alpha isoform 1 | 8.8 | 4 | SEC61A1 |
| Q16643-3 | Isoform 3 of Drebrin | 12.1 | 4 | DBN1 |
| P60842 | Eukaryotic initiation factor 4A-I | 13.5 | 4 | EIF4A1 |
| Q99623 | Prohibitin-2 | 16.1 | 4 | PHB2 |
| P57088 | Transmembrane protein 33 | 14.6 | 3 | TMEM33 |
| P61254 | 60S ribosomal protein L26 | 15.9 | 3 | RPL26 |
| P04844-1 | Ribophorin II | 7.8 | 3 | RPN2 |
| P62913 | 60S ribosomal protein L11 | 18.5 | 3 | RPL11 |
| P51148-2 | Isoform 2 of Ras-related protein Rab-5C | 14.1 | 3 | RAB5C |
| P60866-2 | Isoform 2 of 40S ribosomal protein S20 | 23.9 | 3 | RPS20 |
| P62899-2 | Isoform 2 of 60S ribosomal protein L31 | 25.0 | 3 | RPL31 |
| Q9UNF1 | Melanoma-associated antigen D2 | 13.4 | 3 | MAGED2 |
| Q96CS3 | FAS-associated factor 2 | 12.6 | 3 | FAF2 |
| P16615 | Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 | 5.0 | 3 | ATP2A2 |
| P18085 | ADP-ribosylation factor 4 | 25.0 | 3 | ARF4 |
| Q9UBM7 | 7-Dehydrocholesterol reductase | 6.3 | 3 | DHCR7 |
| P46782 | 40S ribosomal protein S5 | 16.7 | 3 | RPS5 |
| P45880-1 | Voltage-dependent anion-selective channel protein 2_1 | 12.9 | 3 | VDAC2 |
| O15260-1 | Surfeit locus protein 4 | 11.5 | 3 | SURF4 |
| P62854 | 40S ribosomal protein S26 | 18.3 | 2 | RPS26 |
| P62847-4 | Isoform 4 of 40S ribosomal protein S24 | 4.2 | 2 | RPS24 |
| Q14739 | Lamin-B receptor | 4.4 | 2 | LBR |
| P04843 | Ribophorin I | 3.8 | 2 | RPN1 |
| P08238 | Heat shock protein HSP 90β | 3.5 | 2 | HSP90AB1 |
| P14618 | Pyruvate kinase PKM | 6.8 | 2 | PKM |
| Q15555 | Microtubule-associated protein RP/EB family member 2 | 8.6 | 2 | MAPRE2 |