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. Author manuscript; available in PMC: 2019 Nov 2.
Published in final edited form as: J Proteome Res. 2018 Oct 18;17(11):3644–3656. doi: 10.1021/acs.jproteome.8b00206

Figure 7:

Figure 7:

Comparison with existing methods. (A) The panel plots, for four datasets, the number of PSMs accepted as a function of FDR threshold for four different database search methods: MS-GF+, combined p-value, MS-Amanda, and Morpheus. (B) Similar to (A), but the two series correspond to the combined p-value with and without post-processing via Percolator.