Table 2.
List of genes identified by GWAS that contained multiple neighboring significant SNPs and/or significant SNPs of low p-value
| Trait | Chr | SNP | Loc Number | Description |
|---|---|---|---|---|
| PN.day6 | 10 | 1 | LOC_Os10g09700 | OsWAK110 receptor-like kinase |
| PAN | 2 | 3 | LOC_Os02g40410 | expressed protein |
| 4 | LOC_Os02g40420 | expressed protein | ||
| 1 | LOC_Os02g55910 | monogalactosyldiacylglycerol synthase | ||
| 4 | LOC_Os02g56020 | methyltransferase | ||
| 1 | LOC_Os02g56130 | PCNA - Putative DNA replicative polymerase clamp | ||
| 1 | LOC_Os02g56630 | OsWAK24 - OsWAK receptor-like protein | ||
| 5 | 1 | LOC_Os05g47670 | zinc finger, C3HC4 | |
| 2 | LOC_Os05g47690 | reticulon domain containing protein | ||
| 1 | LOC_Os05g47770 | serine/threonine-protein kinase At1g18390 precursor | ||
| 1 | LOC_Os05g47780 | E3 ubiquitin ligase | ||
| 4 | LOC_Os05g47790 | expressed protein | ||
| 10 | 1 | LOC_Os10g03620 | OsFBX344 - F-box domain containing protein | |
| 36 | LOC_Os10g03660 | OsFBX345 - F-box domain containing protein | ||
| 20 | LOC_Os10g03669 | expressed protein | ||
| 2 | LOC_Os10g03730 | OsFBX347 - F-box domain containing protein | ||
| 2 | LOC_Os10g03740 | OsFBX348 - F-box domain containing protein | ||
| 3 | LOC_Os10g03770 | expressed protein | ||
| 3 | LOC_Os10g03780 | OsFBX351 - F-box domain containing protein | ||
| 1 | LOC_Os10g04470 | conserved hypothetical protein | ||
| 2 | LOC_Os10g04480 | expressed protein | ||
| 25 | LOC_Os10g04490 | expressed protein | ||
| 3 | LOC_Os10g04510 | expressed protein | ||
| 2 | LOC_Os10g04520 | expressed protein | ||
| 1 | LOC_Os10g04560 | hypothetical protein | ||
| 3 | LOC_Os10g05050 | expressed protein | ||
| 6 | LOC_Os10g05160 | expressed protein | ||
| 2 | LOC_Os10g05170 | OsWAK100 receptor-like kinase | ||
| 1 | LOC_Os10g05180 | 26S proteasome regulatory subunit S5A | ||
| FG | 4 | 3 | LOC_Os04g08749 | expressed protein |
| UFG | 1 | 8 | LOC_Os01g45120 | expressed protein |
| 7 | 2 | LOC_Os07g04220 | wound and phytochrome signaling involved receptor like kinase | |
| 2 | LOC_Os07g04270 | hypothetical protein | ||
| 1 | LOC_Os07g04290 | alcohol oxidase-related protein | ||
| 1 | LOC_Os07g04310 | expressed protein | ||
| 8 | 1 | LOC_Os08g10330 | SHR5-receptor-like kinase | |
| 1 | LOC_Os08g10430 | NBS-LRR disease resistance protein | ||
| 1 | LOC_Os08g10440 | NBS-LRR disease resistance protein | ||
| 12 | 1 | LOC_Os12g36630 | universal stress protein domain containing protein |