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. 2019 Jan 17;26(1):121–130.e5. doi: 10.1016/j.chembiol.2018.10.015
REAGENT or RESOURCE SOURCE IDENTIFIER
Chemicals, Peptides, and Recombinant Proteins

Dinaciclib Selleckchem Cat. #S2768
AZD5438 Tocris Cat. #3698
Alvocidib Selleckchem Cat. #S1230
CGP74514A Calbiochem Cat. #217696
SU9516 Selleckchem Cat. #S7636

Critical Commercial Assays

ADPglo™ Promega Cat. #V6930

Deposited Data

CDK1/Cks1 Brown et al., 2015 Protein databank (PDB) code: 4YC6
CDK1/cyclin B/Cks2 + AZD5438 This study PDB: 6GU3
CDK1/cyclin B/Cks2 + Alvocidib This study PDB: 6GU2
CDK1/cyclin B/Cks2 + CGP74514A This study PDB: 6GU4
CDK1/Cks2 + Dinaciclib This study PDB: 6GU6
CDK1/Cks2 + AZD5438 This study PDB: 6GU7
CDK2/cyclin A Jeffrey et al., 1995 PDB: 1FIN
CDK2/cyclin A + Alvocidib This study PDB: 6GUB
CDK2/cyclin A + SU9516 This study PDB: 6GUC
CDK2/cyclin A + AZD5438 This study PDB: 6GUE
CDK2/cyclin A + CGP74514A This study PDB: 6GUF
CDK2/Cks1 Bourne et al., 1996 PDB: 1BUH
CDK2 + AZD5438 This study PDB: 6GUH
CDK2 + CGP74514A This study PDB: 6GUK
CDK2 De Bondt et al., 1993 PDB: 1HCK
CDK2 + Dinaciclib Martin et al., 2013 PDB: 4KD1
CDK2 + JWS648 + ANS Betzi et al., 2011 PDB: 3PXZ

Recombinant DNA

Plasmid: GST-CDK1 Brown et al., 2015 N/a
Plasmid: GST-CDK2 with CAK1p Brown et al., 1999 N/a
Plasmid: GST-CDK2 Martin et al., 2012 N/a
Plasmid: Cyclin A (Human) Brown et al., 2015 N/a
Plasmid: Cyclin A (Bovine) Brown et al., 2015 N/a
Plasmid: Cyclin B Brown et al., 2015 N/a
Plasmid: Cks2 Brown et al., 2015 N/a

Software and Algorithms

AceDRG Long et al., 2017 http://www.ccp4.ac.uk/dist/checkout/acedrg/doc/Manual.pdf
ACPYPE Sousa da Silva and Vranken, 2012 https://github.com/llazzaro/acpype
AMBER Homeyer et al., 2006 http://ambermd.org/
Antechamber Wang et al., 2006 http://ambermd.org/
APBS Baker et al., 2001 https://apbs-pdb2pqr.readthedocs.io/en/latest/downloads.html
Biacore s200 Evaluation Software GE Healthcare Hardware Cat. #29136649, software as sold currently Cat. #29310602
CCP4i2 Potterton et al., 2018, Winn et al., 2011 http://www.ccp4.ac.uk/
CCP4MG McNicholas et al., 2011 http://www.ccp4.ac.uk/MG/
Coot Emsley et al., 2010 https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
DIALS Waterman et al., 2013 https://dials.github.io/
Graphpad Prism 6 Graphpad Software https://www.graphpad.com/scientific-software/prism/
g_mmpbsa Kumari et al., 2014 https://rashmikumari.github.io/g_mmpbsa/
GROMACS Van Der Spoel et al., 2005 http://www.gromacs.org/
Origin 7.0 Origin and Malvern Panalytical https://www.malvernpanalytical.com
Phaser McCoy et al., 2007 http://www.ccp4.ac.uk/html/phaser.html
Protein Thermal Shift Software 1.3 Thermo Fisher Scientific Cat. #4466037
Refmac5 Murshudov et al., 2011 http://www.ccp4.ac.uk/html/refmac5.html
XDS Kabsch, 2010 http://xds.mpimf-heidelberg.mpg.de/