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. 2019 Jan 23;85(3):e02056-18. doi: 10.1128/AEM.02056-18

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Copyright © 2019 Palevich et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

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FIG 6 — Functional domains of DEGs encoding carbohydrate transport proteins and surrounding CAZymes identified in xylan- or pectin-grown cultures. (A) MB2003 monoculture on xylan. (B) MB2003 coculture on xylan. (C) B316^T monoculture on pectin. (D) B316^T coculture on pectin. (E) MB2003 monoculture on pectin. (F) MB2003 coculture on pectin. *, CAZyme families of genes and DEGs (red) encoding polysaccharide-degrading enzymes colocalized with carbohydrate transport genes. SBP, solute-binding protein; PP, permease protein; AXE, acetyl-xylan esterase; ABP, ATP-binding protein; EPS, exopolysaccharide; TC system, two-component system histidine kinase; HAD family hydrolase, haloacid dehalogenase superfamily hydrolase. COG designations were as follows: COG0395, COG1175, COG1653, and COG1879, periplasmic component of ABC-type sugar transport system; COG1682, ABC-type polysaccharide/polyol phosphate export systems; COG2182, maltose-binding periplasmic proteins/domains; COG3833, permease component of ABC-type maltose transport systems; COG2211, Na⁺/melibiose symporter and related transporters; COG4213, periplasmic component of ABC-type xylose transport system; COG1129 and COG3839, ATPase component of ABC-type sugar transport systems; COG4209, permease component of ABC-type polysaccharide transport system; COG1172, permease component of ribose/xylose/arabinose/galactoside ABC-type transport systems. Small gray bars indicate signal peptide sequences.