TABLE 1.

Differential gene expression analysis for B316^T and MB2003 grown on xylan and pectin

			No. of DEGs
Sample and replicon	No. of ORFs in genomea	Total no. of ORFs mapped	FDR Q of <0.05b	Adjusted P of <0.05c	Q/P of <0.05 and log2 ≥2-fold changes	Monocultured	Cocultured
Growth on xylan
B316T
Chromosome	2,939	1,582	152	66	14	8	6
pCY290	251	112	12	3	1	1	0
pCY360	425	151	10	4	1	0	1
pCY186	198	51	10	2	1	1	0
Total	3,813	1,896	184	75	17	10	7
MB2003
Chromosome	2,767	878	501	413	279	189	90
BhuII	88	83	25	24	13	11	2
pNP144	147	137	30	24	15	15	0
pNP6	5	0	0	0	0	0	0
Total	3,007	1,098	556	461	307	215	92
Growth on pectin
B316T
Chromosome	2,939	257	167	42	42	38	4
pCY290	251	38	13	5	4	2	2
pCY360	425	45	45	9	9	8	1
pCY186	198	18	13	1	1	1	0
Total	3,813	358	238	57	56	49	7
MB2003
Chromosome	2,767	2,765	986	671	659	604	55
BhuII	88	88	80	57	51	47	4
pNP144	147	147	129	79	77	74	3
pNP6	5	0	0	0	0	0	0
Total	3,007	3,000	1,195	807	787	725	62

^aORF, open reading frame.

^bFDR reported as Q values.

^cKruskal-Wallis ANOVA, reported as P values.

^dNumbers of DEGs were calculated by considering the monoculture and coculture conditions separately.