The addition of clinical features did not improve the AUC of the MRadiomics (P=0.623), the MMCNNs (P=0.114) and the MRadiomics+MCNNs (P=0.058). The MMCNNs outperformed the MRadiomics (P=0.0225). The MMCNNs+Radiomics did better than the MRadiomics (P=0.009), but not the MMCNNs (P=0.742). The MMCNNs did not demonstrate inferiority compared with the MRadiomics+MCNNs (P=0.742) and the MRadiomics+MCNNs+Clinical (P=0.056) in terms of AUC. MCCNs, multi-level residual CNNs; CNN, convolutional neural network; AUC, area under the receiver operating characteristic curve; EGFR, epithelial growth factor receptor.