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. 2018 Oct 10;47(2):e8. doi: 10.1093/nar/gky890

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© The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 3. — Comparative analysis of the repetitive DNA regions determined to overlap with protein-coding regions in the Xanthomonas genus. (A) An ABC transporter-coding region involving a DNA repeat of 16-bp period. Line box denotes the genomic regions used for the comparative genomic analysis presented in (C). (B) A hypothetical protein-coding region overlapped with a DNA repeat of 60-bp period. Line box denotes the genomic regions used for the comparative genomic analysis presented in (D). (C–E) Sequence alignment analysis of the repetitive DNA sequences and their protein-coding patterns amongst the Xoo PXO83, PXO86, PXO99, KACC10331, and MAFF311018 genomes. With protein/pseudogene-coding structures under the label of each genome, the within- and between-genome alignment results are represented by light blue lines for DNA and orange boxes for proteins, respectively. (C) For an ABC transporter-coding region in the Xoo PXO83 genome. (D) For a hypothetical protein-coding region overlapping with a DNA repeat of 60-bp period in the Xoo PXO83 genome. (E) For a large DNA repeat region with a repeat unit size of 787 that overlaps with three different hypothetical genes in the Xoo PXO83 genome.