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. Author manuscript; available in PMC: 2019 Jan 24.
Published in final edited form as: J Phys Chem B. 2018 Jul 19;122(30):7484–7496. doi: 10.1021/acs.jpcb.8b04249

Figure 2:

Figure 2:

(A) Multiple pathways for the formation of a helix after the first nucleation stack is formed. For example, after stage 2, there are two folding pathways: 1→2→3 and 1→2→4. (B) The free energy landscape of the tunneling pathway between two overlapping helices A and B. k1 denotes the transition rate of the unfolding of helix A to form the first stack of helix B. k1,k2,k2,,kn denote the transition rates between the neighboring intermediates along the tunneling pathways.22