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. 2019 Jan 24;9:728. doi: 10.1038/s41598-018-37305-z

Figure 4.

Figure 4

Elephant APOBEC3Z1 deamination of 5-methylcytidine. (a) 3D-PCR recovered edited 5MeC substituted HIV env DNA down to 77°C and 75.7°C for hA3A and eA3Z1 respectively. The white line indicates the threshold between edited and unedited 3D-PCR products in terms of the denaturation temperature. Pv and hA3AC101S showed no editing of 5MeC substituted HIV env DNA and were used as negative control. Asterisks refer to the samples cloned and sequenced. M, molecular weight markers. (b) Dinucleotide context for human and elephant A3A deamination of 5MeC. Chi-square test indicates dinucleotide frequencies that significantly deviate from the expected values (*p < 0.05). (c) CG- > TA mutation frequencies analyzed with hA3AC101S and pv at 82.1°C and with hA3A and eA3Z1 at 80.3°C.