Skip to main content
. 2019 Jan 25;20:21. doi: 10.1186/s13059-019-1621-7

Table 1.

Genomic alignments for guides targeting SOX9 and SOX10 in the Avana library

Type On-target Off-target Spacer sequence BaseSub Chr Pos
Guide A1 PM SOX9 GCTCGGACACCGAGAACACG 17 72,121,509
Guide A2 PM SOX9 GCAGCACAAGAAGGACCACC 17 72,122,775
MM SOX10 GCAGCACAAGAA-GACCACC G →A 22 37,978,058
Guide A3 PM SOX9 GCACCTGGCTGACCGCCTCG 17 72,121,612
MM SOX10 GCACCTGGCTGAC-GCCTCG C →G 22 37,983,546
Guide A4 PM SOX9 GCTGGTACTTGTAATCCGGG 17 72,122,793
MM SOX10 GCTGGTACTTGTA-TCCGGG A →G 22 37,978,040
Guide B1 PM SOX10 ACAAGTACCAGCCCAGGCGG 22 37,978,032
Guide B2 PM SOX10 GTAGTGGGCCTGGATGGCGG 22 37,977,942
Guide B3 PM SOX10 GCACCTGGCTGACGGCCTCG 22 37,983,546
MM SOX9 GCACCTGGCTGAC-GCCTCG G →C 17 72,121,612
Guide B4 PM SOX10 GCTGGTACTTGTAGTCCGGG 22 37,978,040
MM SOX9 GCTGGTACTTGTA-TCCGGG G →A 17 72,122,793
MM SOX8 GCTGGTACTTGTAGTC-GGG C →G 16 983,802

PM perfect match alignment, MM single-mismatch alignment, BaseSub base substitution in the protospacer sequence