Bacterial and Virus Strains |
E. coli BL21-CodonPlus (DE3)-RIL |
Stratagene |
N/A |
Chemicals, Peptides, and Recombinant Proteins |
ATP |
Roche |
Cat.#10127531001; CAS: 51963-61-2 |
MANT-ATP |
Jena Bioscience |
Cat.#NU-202; CAS: 151481-86-6 |
BzATP |
Sigma-Aldrich |
Cat.#B6396; CAS: 112898-15-4 |
Malachite green |
Sigma-Aldrich |
Cat.#M9636; CAS: 123333-61-9 |
Ammonium molybdate |
Sigma-Aldrich |
Cat.#A1343; CAS: 12054-85-2 |
Citric acid |
Sigma-Aldrich |
Cat.#C7129; CAS: 5949-29-1 |
Ni-NTA agarose |
QIAGEN |
Cat.#30230 |
Q-Sepharose Fast Flow |
GE Healthcare |
Cat.#17051001 |
Superdex 200 10/300 GL column |
GE Healthcare |
Cat.#17108801 |
Zeba Spin desalting column |
Thermo Fisher |
Cat.#89882 |
PD-10 column |
GE Healthcare |
Cat.#17085101 |
κ-casein |
Sigma-Aldrich |
Cat.#C0406; CAS: 9000-71-9 |
Deposited Data |
Hsp104DWB (Open) |
This paper |
PDB: 6N8V; EMD-0376 |
Hsp104DWB (Closed) |
This paper |
PDB: 6N8T; EMD-0375 |
Hsp104DWB (Extended) |
This paper |
PDB: 6N8Z; EMD-0377 |
Recombinant DNA |
Plasmid expressing Hsp104 |
Lee et. al, 2010 |
pHsp104 |
Plasmid expressing Hsp104DWB
|
Lee et. al, 2010 |
pTRAP |
Software and Algorithms |
Microsoft Excel |
Microsoft |
https://products.office.com/en-us/excel |
SerialEM |
Mastronarde, 2005 |
http://bio3d.colorado.edu/SerialEM/ |
UNBLUR |
Grant and Grigorieff, 2015 |
http://grigoriefflab.janelia.org/unblur |
EMAN2 |
Bell etal., 2016 |
https://blake.bcm.edu/emanwiki/EMAN2 |
RELION 1.4 |
Scheres, 2012 |
http://www2.mrc-lmb.cam.ac.uk/relion |
Chimera |
Pettersen et al., 2004 |
https://www.cgl.ucsf.edu/chimera |
Other |
Holey carbon grid, Cu 400 mesh |
Quantifoil Micro Tools GmbH |
Quantifoil R 1.2/1.3 |