Illumina |
C. jejuni/coli
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Antimicrobial resistance profiling |
Clinical, meats, ceca isolates; USA; Zhao et al. (2016)
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Identified antimicrobial resistance genes to predict phenotypic resistance. |
Illumina |
C. jejuni/coli
|
Antimicrobial resistance profiling |
Poultry isolates; USA; Whitehouse et al. (2018)
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Identified antimicrobial resistance genes to predict phenotypic resistance. |
Illumina |
C. jejuni
|
Antimicrobial resistance profiling |
Clinical, poultry isolates; Estonia; Mäesaar et al. (2018)
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Used WGS and MLST to analyze antimicrobial resistance in strain types. |
Illumina |
C. jejuni
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Antimicrobial resistance profiling |
Poultry isolates; Europe; Leekitcharoenphon et al. (2018)
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Examined fluoroquinolone resistance in poultry isolates from 12 European countries. |
Illumina |
Campylobacter spp. |
Comparative analysis |
Poultry, bird isolates; USA; Lawton et al. (2018)
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Compared using MALDI-TOF MS as a rapid method to identify Campylobacter isolates to species level. |
Ion torrent |
C. jejuni
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Comparative analysis |
Clinical, animal, environmental isolates; France; Thépault et al. (2018)
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Studied pathogen source attribution of campylobacteriosis in France using WGS and MLST. |
Illumina |
C. jejuni/coli
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Epidemiology |
Chicken liver pâté; Sweden; Lahti et al. (2017)
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Outbreak of campylobacteriosis due to undercooked chicken liver pate. |
Illumina/wgMLST |
C. jejuni
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Epidemiology |
Clinical, poultry, bovine isolates; Israel; Rokney et al. (2018)
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Used WGS and wgMLST to screen for virulence genes in Isreaeli C. jejuni isolates. |
Illumina |
C. jejuni
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Genome sequence |
Poultry isolates; USA; Taveirne et al. (2017)
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Sequenced three C. jejuni strains from naturally colonized farm-raised chickens. |
Illumina/SMRT |
C. jejuni
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Genome sequence |
Poultry isolates; USA; Sacher et al. (2018)
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Sequenced three phage-propagating strains of C. jejuni. |
Illumina/SMRT |
C. coli
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Genome sequence |
Poultry isolate; USA; Ghatak et al. (2017)
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Discovered type VI secretion system and antimicrobial resistance genes in plasmid of C. coli YH502. |
Ion Torrent |
C. jejuni/coli
|
Genome sequence |
Chicken sushi; Japan; Asakura et al. (2017)
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Sequenced two isolates associated with an outbreak due to consumption of undercooked chicken sushi. |
Illumina |
C. jejuni
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Genome wide association study |
Clinical, animal, environmental isolates; Canada; Buchanan et al. (2017)
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Identified gene markers associated with clinically related C. jejuni isolates. |
Illumina |
C. jejuni/coli
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Stress resistance |
Clinical, poultry isolates; UK; O’Kane and Connerton (2017)
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Analyzed aerotolerant C. coli strain. |