Table 1.
Loop Class | GUS | Optimal pH | kcat (s−1) | Km (mM) | kcat/Km (s−1mM−1) |
---|---|---|---|---|---|
L1 | E. coli | 7.4 | 120 ± 10a | 0.13 ± 0.01a | 920 ± 10a |
L1 | E. eligens | 6.5 | 120 ± 8 | 0.223 ± 0.008 | 540 ± 20 |
L1 | S. agalactiae | 6.5 | 122 ± 3 | 0.17 ± 0.01 | 720 ± 30 |
L1 | C. perfringens | 6.5 | 57 ± 2 | 0.16 ± 0.02 | 360 ± 40 |
L1 | F. prausnitzii | 6.0 | 58 ± 4 | 2.2 ± 0.3 | 27 ± 2 |
L1 | L. rhamnosus | 4.5 | 10.0 ± 0.7 | 1.5 ± 0.1 | 6.7 ± 0.3 |
L1 | R. gnavus | 6.5 | 2.8 ± 0.3b | 1.4 ± 0.2b | 2.0 ± 0.1b |
mL1 | B. fragilis | 5.0 | 22 ± 2 | 0.58 ± 0.09 | 39 ± 4 |
L2 | B. uniformis | 5.5 | 37 ± 2 | 0.54 ± 0.06 | 71 ± 6 |
mL2 | P. merdae | 5.5 | 0.088 ± 0.001 | 2.40 ± 0.07 | 0.0368 ± 0.0008 |
mL1,2 | B. ovatus | 5.0 | 0.48 ± 0.03b | 1.38 ± 0.01b | 0.34 ± 0.02b |
NL | B. dorei | 6.0 | 7.5 ± 0.4 | 1.4 ± 0.1 | 5.2 ± 0.5 |
Data are presented as the average of 3 biological replicates and errors are standard error of the mean (SEM). kcat is catalytic rate; Km is Michaelis constant; kcat/Km is catalytic efficiency. Crystal structures reported in this study are underlined. aData were previously reported in Wallace et al.17. bData are reported as apparent kcat and Km values.