Table 1.
Top SNPs associated with body weight and feed efficiency traits using mixed linear model approach.
| Trait | Chromosome | Number of significant SNPs | Top SNP in 1 MB window | Galgal5 position (bp) | -log10 (P-value) | SNP effect (SE) | Proximal gene | Distance from gene |
|---|---|---|---|---|---|---|---|---|
| Body weight (36days) | 12 | 8 | rs13612706 | 12867052 | 5.03 | −0.039 (0.009) | PTPRG | Within |
| Body weight (36 days) | 14 | 1 | rs14073523 | 5337950 | 4.89 | 0.036 (0.008) | CACNA1H | Within |
| Body weight (36 days) | 8 | 1 | rs16617885 | 1883743 | 4.79 | −0.051 (0.012) | LOC107053920 | Within |
| Body weight (39 days) | 12 | 1 | rs10723005 | 11570033 | 4.89 | −0.054 (0.012) | CCDC71 | Within |
| Body weight (39 days) | 12 | 3 | rs316610173 | 12931647 | 4.74 | −0.047 (0.011) | PTPRG | Within |
| Body weight (39 days) | 12 | 2 | rs15652523 | 10278318 | 4.72 | −0.043 (0.010) | LOC107054392 | 2.52 Kb upstream |
| Body weight (39 days) | 14 | 1 | rs14073523 | 5337950 | 4.67 | 0.041 (0.010) | CACNA1H | Within |
| Body weight (39 days) | 1 | 1 | rs13880135 | 66076666 | 4.44 | 0.040 (0.010) | SOX5 | Within |
| Body weight (39 days) | 23 | 1 | rs16190017 | 3741996 | 4.38 | 0.043 (0.011) | RSPO1 | Within |
| Body weight (46 days) | 6 | 1 | rs315083186 | 7305184 | 4.94 | −0.118 (0.027) | LOC101748440 | Within |
| Body weight (46 days) | 1 | 1 | rs314956606 | 61033904 | 4.39 | −0.095 (0.023) | ADIPOR2 | Within |
| Feed intake | 1 | 1 | rs15384287 | 110928416 | 4.96 | −0.111 (0.021) | KDM6A | Within |
| Body weight gain | 8 | 1 | rs16617885 | 1883743 | 4.43 | −0.058 (0.013) | LOC107053920 | Within |
| Body weight gain | 17 | 1 | rs14098962 | 7902999 | 4.32 | −0.054 (0.012) | LOC107052218 | Within |
| Feed conversion ratio | 17 | 1 | rs14098962 | 7902999 | 4.78 | 0.082 (0.019) | LOC107052218 | Within |
| Feed conversion ratio | 6 | 1 | rs14568465 | 6730175 | 4.30 | 0.073 (0.018) | CTNNA3 | Within |