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. 2019 Jan 29;4(1):e00261-18. doi: 10.1128/mSystems.00261-18

TABLE 1.

Differences in relative abundances of bacterial families present in ileal and cecal digesta of low- and high-RFI broiler chickens fed either ad libitum or restrictivelya

Family % Relative abundance
SEM P value
Ad libitum feeding
Restrictive feeding
Low RFI High RFI Low RFI High RFI FL RFI FL × RFI
Ileum
    o__Clostridiales;f__ 3.58 0.83 6.83 11.27 4.229 0.112 0.843 0.400
    f__Turicibacteraceae 42.20 48.27 29.06 27.85 8.661 0.058 0.780 0.676
    f__Ruminococcaceae 0.95 0.22 4.49 2.47 1.642 0.084 0.408 0.695
    f__Enterobacteriaceae 37.49 22.83 17.74 11.14 7.155 0.033 0.143 0.576
    f__Lactobacillaceae 9.38 22.13 35.34 33.30 9.064 0.046 0.557 0.419
    f__Lachnospiraceae 0.22 0.063 0.76 0.49 0.284 0.096 0.453 0.832
    f__Peptostreptococcaceae 3.65 3.50 2.56 6.15 1.699 0.647 0.316 0.277
    f__Clostridiaceae 2.15 1.83 2.60 6.62 2.247 0.249 0.414 0.339
    o__RF39;f__ 0.023 0.008 0.060 0.071 0.033 0.134 0.949 0.700
    f__Christensenellaceae 0.050 0.0012 0.091 0.036 0.039 0.330 0.185 0.934
    f__Bacillaceae 0.062 0.018 0.090 0.044 0.047 0.560 0.337 0.989
    o__Streptophyta;f__ 0.13 0.10 0.23 0.18 0.086 0.289 0.665 0.912
    o__Clostridiales; Other 0.025 0.028 0.019 0.033 0.009 0.942 0.342 0.559
    f__Dehalobacteriaceae 0.0004 0 0.016 0.005 0.005 0.054 0.292 0.336
    f__Erysipelotrichaceae 0.005 0.006 0.007 0.014 0.004 0.281 0.419 0.436
    f__Coriobacteriaceae 0.113 0.100 0.090 0.060 0.019 0.103 0.258 0.673
    f__Enterococcaceae 0.037 0.031 0.027 0.071 0.0181 0.394 0.298 0.172
    f__Corynebacteriaceae 0.0006 0.007 0.003 0.078 0.0351 0.296 0.252 0.329
Ceca
    o__Clostridiales;f__ 51.67 51.87 65.29 66.09 3.217 <0.001 0.876 0.926
    f__Turicibacteraceae 0.35 0.97 0.12 0.016 0.228 0.012 0.263 0.119
    f__Ruminococcaceae 29.00 29.54 23.37 25.23 2.358 0.040 0.614 0.781
    f__Enterobacteriaceae 7.82 6.62 2.34 0.90 1.571 <0.001 0.406 0.940
    f__Lactobacillaceae 0.96 0.73 1.17 1.11 0.326 0.373 0.662 0.798
    f__Lachnospiraceae 7.94 7.65 5.24 4.16 0.978 0.003 0.487 0.688
    f__Peptostreptococcaceae 0.062 0.048 0.022 0.010 0.011 <0.001 0.160 0.906
    f__Clostridiaceae 0.18 0.41 0.04 0.06 0.129 0.059 0.348 0.400
    o__RF39;f__ 0.61 0.90 1.00 0.69 0.190 0.648 0.975 0.117
    f__Christensenellaceae 0.52 0.17 0.65 0.49 0.123 0.079 0.047 0.427
    f__Bacillaceae 0.38 0.42 0.19 0.76 0.179 0.661 0.095 0.142
    o__Streptophyta;f__ 0 0 0 0.0008 0.0004 0.339 0.308 0.339
    o__Clostridiales; Other 0.072 0.106 0.104 0.078 0.031 0.938 0.887 0.343
    f__Dehalobacteriaceae 0.084 0.079 0.135 0.136 0.019 0.007 0.938 0.863
    f__Erysipelotrichaceae 0.086 0.165 0.072 0.073 0.033 0.113 0.226 0.243
    f__Coriobacteriaceae 0.005 0.006 0.007 0.014 0.004 0.281 0.419 0.436
    f__Enterococcaceae 0.005 0.005 0.002 0.003 0.003 0.069 0.753 0.615
    f__Corynebacteriaceae 0 0.000003 0 0.0006 0.0002 0.150 0.145 0.150
a

Data are presented as least-squares means and pooled standard errors of the means (SEM). n =7 per FL group, residual-feed-intake (RFI) rank, and sex except for n =8 high-RFI ad libitum females. RFI was calculated for the experimental period from 9 to 30 days posthatch. FL, feed intake level.