Table 2. Characteristics of domestic and non-domestic clusters of STEC O157:H7, England, 2013–2017.
| Domestic lineage, clade or cluster Sub-lineages Ic and IIb and clusters within sub-lineages IIc and I/II |
Non-domestic lineage, clade Sub-lineages Ia, Ib and IIa and I/II |
|---|---|
| Characteristics | |
| Common in domestic dataset | Rare in domestic dataset |
| Short branch lengths (low level diversity) between clusters and clades representing frequent sampling of a restricted pool | Longer branch lengths (high level diversity) between clusters and clades representing infrequent sampling of the global pool |
| High frequency of domestic animal isolates sampled during prevalence studies and sequenced isolates are included in the dataset | Domestic animal isolates not present |
| Cases do not report recent travel outside the UK before onset of symptoms | High frequency of cases reporting recent travel before onset of symptoms |
| Cases from outbreaks known to be associated with domestically produced food, | Cases from outbreaks known to be associated with imported food, Outbreak Scenario 2 |
| Cases associated with local environmental exposures, such as petting farms or parks | Cases not associated with local environmental exposures |
STEC: Shiga toxin-producing Escherichia coli; UK: United Kingdom.