Table.
Illumina Gene Annotation | Genes Within 50 kb of Associated CpG | Discovery Set(n = 1334) |
Replication Set(n = 497) |
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---|---|---|---|---|---|---|---|---|---|
Probe | Chromosome | Position | Δ | P Value | FDR | Δ | P Value | ||
cg04792777 | 14 | 106322429 | NA | IGHE; IGHG1; IGHD; KIAA0125; MIR4507; MIR4538; MIR4537; MIR4539 | −0.007 | 1.06E–07 | 0.01 | −0.008 | E–<.001 |
cg13092108 | 1 | 26857284 | RPS6KA1 | RPS6KA1; MIR1976 | −0.008 | 1.16E–07 | 0.01 | −0.009 | 4.38E–05 |
cg04962621 | 16 | 4714733 | MGRN1 | MGRN1; NUDT16L1; ANKS3 | −0.009 | 1.32E–07 | 0.01 | −0.007 | 6.95E–05 |
cg13997435 | 1 | 153538406 | S100A2 | S100A6; S100A5; S100A4; S100A3; S100A2; S100A16; S100A14 | −0.007 | 3.26E–07 | 0.01 | −0.005 | 2.77E–02 |
cg26385126 | 12 | 124912021 | NCOR2 | NCOR2 | 0.006 | 4.99E–07 | 0.01 | 0.010 | 3.91E–07 |
cg07458272 | 19 | 34744396 | KIAA0355 | LSM14A; KIAA0355 | 0.010 | 5.39E–07 | 0.01 | 0.007 | 2.10E–02 |
cg13549638 | 17 | 78860076 | RPTOR | RPTOR | 0.013 | 6.70E–07 | 0.01 | 0.008 | 3.72E–02 |
cg10975863 | 14 | 68830704 | RAD51B | RAD51B | 0.011 | 6.90E–07 | 0.01 | 0.010 | 1.62E–02 |
cg22891595 | 3 | 193570256 | NA | AK091265 (cDNA) | 0.011 | 6.94E–07 | 0.01 | 0.006 | 4.98E–02 |
cg06996599 | 6 | 30619232 | C6orf136 | PPP1R10; MRPS18B; ATAT1; DHX16; PPP1R18; NRM; MDC1 | 0.007 | 9.39E–07 | 0.02 | 0.006 | 3.28E–03 |
cg23387863 | 15 | 77472416 | PEAK1 | PEAK1 | 0.010 | 1.02E–06 | 0.02 | 0.011 | 6.62E–04 |
cg25323444 | 7 | 2111060 | MAD1L1 | MAD1L1 | 0.011 | 1.07E–06 | 0.02 | 0.011 | 2.32E–04 |
cg11621113 | 19 | 12776725 | MAN2B1 | ZZNF791; MAN2B1; DHPS; FBXW9; WDR83; TNPO2 | −0.008 | 1.09E–06 | 0.02 | −0.013 | 8.72E–10 |
cg23009327 | 19 | 1630248 | TCF3 | MBD3; UQCR11; TCF3 | 0.010 | 1.32E–06 | 0.02 | 0.007 | 7.92E–03 |
cg12939085 | 11 | 67166104 | PPP1CA | POLD4; CLCF1; RAD9A; PPP1CA; TBC1D10C; CARNS1; RPS6KB2; PTPRCAP; CORO1B | 0.008 | 2.45E–06 | 0.02 | 0.006 | 4.65E–03 |
Abbreviations: DMP, differentially methylated positions; FDR, false discovery rate; NA, not available.
Listed are the top 15 replicated results. All replicated DMPs with an FDR of less than 0.20 are listed in eTable 3 in the Supplement.